Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1428 ATGGCCACTACTACATTCTGTACATACCTATTCCTTCTCTCTGTGTCCATTTCAATCTTCAATCTTTGTTCATCTTCATCAGAGGGGGACATCCTTCTCTCCTTCAAGGCCTCCATTGAAGACTCTAAGAAGGCCTTGTCCACCTGGTCCAACACTTCATCAAACCACCACTGTAACTGGACTGGAATAACCTGTTCCGCAACACCTTTACTCTCAGTAACTTCTATCAACCTTCAGAGCTTAAACCTTTCTGGGGATATCTCATCTTCCATTTGTGACCTCCCAAATCTGTCTTATCTCAACCTTGCTGATAACATCTTCAACCAGCCCATCCCTCTTCATCTCTCTGACTGTAGTTCCTTGGAGACTTTGAATCTCAGTACCAACCTCATATGGGGCACTATCCCATCTCAGATTTCTCAGTTTGCTTCCTTGAGAGTGCTTGACTTGGGAAGAAACCACATAGAAGGAAAAATCCCTGAAAGCTTAGGCTCCTTGAAGAACCTCCAAGTCCTCAACATGGGAAGCAACTTGCTTTCAGGTAGTGTACCTGCTGTCTTTGGCAATCTAACTAAACTTGAAGTTCTTGATTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCAAAGGATATCGGCGAGCTTGGAAATCTAAAGCAACTTCTGTTGCAAAGCTCTTCTTTTCAAGGGAAAATTCCAGATTCTCTGGTGGGCCTGGTTAGTTTGACTCATTTAGATCTCTCTGAGAACAACCTAACAGGTGGGGTTCCTCAGGCTCTACCATCTTCTCTCAAGAACCTTGTTTCGTTAGATGTTTCAACAAACAAGCTCTTGGGGCCATTTCCTAGTGGCATCTGCAAAGGAGAAGGCCTCATAAACCTCGGTCTCCACTCAAATGCCTTCAATGGTTCAATACCCAACTCCATTGAGGAATGTAAGAGTCTTGAGAGATTCCAAGTCCAGAACAATGCCTTCTCCGGGGATTTCCCCATTTCCTTGTGGTCATTGCCCAAAATCAAGCTCATTAGAGTTGAAAACAACAGATTCTCTGGACAAATACCGGAGTCAATTTCAGGAGCTGTTCAGTTGGAGCATGTTCAGCTTGACAACAACAGCTTCGCTGGTAAAATTCCTCAAGGTCTTGGCTTTGTTAAGAGCTTATACAGATTTTCTGCTTCTCTCAACCTTTTGGATGGTGAAATTCCTCCAAACTTTTGTGACTCTCCTGTTATGAGCATAGTAAATCTCTCCCACAATTCTCTTTCTGGTAAAATACCAGCGCTGAAAAAATGCAGGAAACTAGTTTCATTGTCTTTGGCTGATAACAGTCTAACTGGAGAAATCCCCCCTTCTCTTGCCGAGCTACCTGTACTCACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAGAACTTGAAGCTTGCTCTTTTCAATGTCTCCTTCAATCAGCTATCAGGTAAAGTACCATACTCCTTGATTTCTGGTCTCCCTGCCTCATTTTTGGACGGAAACCCTGGTCTTTGTGGCCCTGGATTACCTAACTCTTGTTCTGATGACATGCCAAGACGCCACATTGGTAGCCTTACAACCTTAGCATGTGCTCTCATCAGTTTAGCCTTTGTTGTTGGAACTGCCATTGTTGTTGGTGGGTTTATTTTGTATCGGGGATATTGCAAGGGGAATCAAGTTGGGGTTTGGCGCTCAGTGTTCTTTTATCCTCTCAGGATTACCGAGCATGATCTACTTGTAGGGATGAATGAGAAAAACTCAATGGGTAATGGTGGGTTTTTTGGTAGAGTTTATGTTGTGAGTTTACCTAGTGGTGAACTGGTAGCTGTGAAGAAGTTAGTCAATTTTGGAAACCAGTCCTCCAAAAGTTTGAAAGCGGAGGTGAAGACTTTGGCAAAAATTAGGCACAAGAATGTGGTTAAAATTCTGGGGTTCTGCCACTCCGATGAGTCAGTGTTTCTCATTTATGAGTACTTGCATGGAGGGAGCTTAGGGGATTTGATTTCTCGTCAGAATTTTGAGCTGCAGTGGGTGGTTCGATTAAGAATTGCCATTGGAGTTGCTCAAGGGCTGGCATATCTTCACAAGGATTATCTCCCTCACTTGCTCCACAGAAATGTCAAGTCAAGTAATATTTTGTTGGATGCAAACTTCGAGCCAAAACTCACAGATTTTGCTCTTGATCGAGTTGTGGGAGAAGCTTCATTTCAATCAATATTGAACTCTGAAGCAGCATCTTCATGTTACATCGCACCAGAAAATGGTTACAGTAAGAAAGCAACTGAACAATTGGACATCTACAGCTTTGGTGTGGTATTGCTGGAGCTGGTGAGTGGTAGGCAAGCAGAGCAAACGGAGTCAATTGACTCAGTTGACATTGTGAAGTGGGTTAGAAGGAAAGTGAACATCGCCAATGGGGTGCATCAAGTTCTTGACCCAAAAATATCAAACACTTGTCACCAAGAGATGATTGGAGCTTTAGATATTGCACTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCCATGGTAGAAGTTGTTAGAAGCCTTCAATCCCTGGAGTCAAGAACTTGCAATGCAAATATGCTTGAACCAAATGAGGAACCCTCAGTACCAGTCTGA 2655 0.4331 MATTTFCTYLFLLSVSISIFNLCSSSSEGDILLSFKASIEDSKKALSTWSNTSSNHHCNWTGITCSATPLLSVTSINLQSLNLSGDISSSICDLPNLSYLNLADNIFNQPIPLHLSDCSSLETLNLSTNLIWGTIPSQISQFASLRVLDLGRNHIEGKIPESLGSLKNLQVLNMGSNLLSGSVPAVFGNLTKLEVLDLSQNPYLVSEIPKDIGELGNLKQLLLQSSSFQGKIPDSLVGLVSLTHLDLSENNLTGGVPQALPSSLKNLVSLDVSTNKLLGPFPSGICKGEGLINLGLHSNAFNGSIPNSIEECKSLERFQVQNNAFSGDFPISLWSLPKIKLIRVENNRFSGQIPESISGAVQLEHVQLDNNSFAGKIPQGLGFVKSLYRFSASLNLLDGEIPPNFCDSPVMSIVNLSHNSLSGKIPALKKCRKLVSLSLADNSLTGEIPPSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLDGNPGLCGPGLPNSCSDDMPRRHIGSLTTLACALISLAFVVGTAIVVGGFILYRGYCKGNQVGVWRSVFFYPLRITEHDLLVGMNEKNSMGNGGFFGRVYVVSLPSGELVAVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLGDLISRQNFELQWVVRLRIAIGVAQGLAYLHKDYLPHLLHRNVKSSNILLDANFEPKLTDFALDRVVGEASFQSILNSEAASSCYIAPENGYSKKATEQLDIYSFGVVLLELVSGRQAEQTESIDSVDIVKWVRRKVNIANGVHQVLDPKISNTCHQEMIGALDIALRCTSVVPEKRPSMVEVVRSLQSLESRTCNANMLEPNEEPSVPV* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1428 884 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Pvu1g1428 884 Gene3D Phosphorylase Kinase; domain 1 586 668 - -
Pvu1g1428 884 PRINTS Leucine-rich repeat signature 242 255 - -
Pvu1g1428 884 PRINTS Leucine-rich repeat signature 455 468 - -
Pvu1g1428 884 ProSiteProfiles Protein kinase domain profile. 593 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1428 884 SUPERFAMILY L domain-like 26 301 - -
Pvu1g1428 884 Gene3D Ribonuclease Inhibitor 256 526 IPR032675 -
Pvu1g1428 884 PANTHER - 8 870 - -
Pvu1g1428 884 Gene3D Ribonuclease Inhibitor 184 238 IPR032675 -
Pvu1g1428 884 SUPERFAMILY Protein kinase-like (PK-like) 601 861 IPR011009 -
Pvu1g1428 884 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Pvu1g1428 884 Pfam Leucine rich repeat 217 277 IPR001611 GO:0005515
Pvu1g1428 884 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Pvu1g1428 884 SMART LRR_typ_2 190 215 IPR003591 -
Pvu1g1428 884 SMART LRR_typ_2 455 478 IPR003591 -
Pvu1g1428 884 SMART LRR_typ_2 142 165 IPR003591 -
Pvu1g1428 884 SMART LRR_typ_2 264 288 IPR003591 -
Pvu1g1428 884 SMART LRR_typ_2 166 189 IPR003591 -
Pvu1g1428 884 SMART LRR_typ_2 239 262 IPR003591 -
Pvu1g1428 884 Gene3D Transferase(Phosphotransferase) domain 1 669 879 - -
Pvu1g1428 884 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 870 - -
Pvu1g1428 884 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Pvu1g1428 884 Pfam Protein kinase domain 594 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1428 884 ProSiteProfiles Leucine-rich repeat profile. 457 480 IPR001611 GO:0005515
Pvu1g1428 884 SUPERFAMILY L domain-like 206 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1428 Pvu-Chr1 38417095 38421009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1428 32 864 Receptor kinase-like Gene Family AT5G06940 64.678 0.0 1070
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pvu1g1428 Pkinase 1.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1428 - - gmx:100794428 1557.35