Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1427 ATGGCGCAGAAGAAGAAAGCTAGGATTTCTGACGACGAGGAAATGAAAGGGCAGCGTGATGAAACCAGCCTCTACCAGGTTCTTGGTGTGGAGAGAACCGCGTCTCAGCAGGAAATAAAGAAGGCTTACTACAAGTTGGCGTTGAGGCTCCATCCTGATAAGAACCCTGGTGATGAGGAAGCTAAAGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGGACACTTTATGATCAAACTGGATGTCTTGATGATGATGACCTTGCTGGAGATGCTGTTCAGAATCTTCAAGAGTTCTTCAGAACAATGTACAAGAAGGTCACGGAAGCTGATATTGAGGAGTTTCAAGCAAACTATAGAGGATCTGACTCGGAGAAAAATGATTTGATTGATTTGTACAAAAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTGCTGGAGAACTAAAGGCAACAAAAGCCTACCAGAAATGGGCTAAGGAAGTATCTGAAACCAAACCGCCCTCAAATCCTTTGAGAAGGAGGGAAAAGTCTAATAAGCAGTCAGAAACAGATCTGCATGCAATGATAGCCCAACGCCAAAATGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTCTAGTTTCAAAATATGGTGGAGGTGATATGCCGGAACCCTCTGAAGAGGAGTTTGAAGCTACACGGAGAAAGCTAGAGACTGGTAGATCCTCTAAAAACTCAAAACAATCCAAGCGGAAGTAA 834 0.4293 MAQKKKARISDDEEMKGQRDETSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRTLYDQTGCLDDDDLAGDAVQNLQEFFRTMYKKVTEADIEEFQANYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDEAIAAGELKATKAYQKWAKEVSETKPPSNPLRRREKSNKQSETDLHAMIAQRQNERKGQFDSMFSSLVSKYGGGDMPEPSEEEFEATRRKLETGRSSKNSKQSKRK* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1427 277 MobiDBLite consensus disorder prediction 252 270 - -
Pvu1g1427 277 MobiDBLite consensus disorder prediction 197 213 - -
Pvu1g1427 277 MobiDBLite consensus disorder prediction 1 20 - -
Pvu1g1427 277 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
Pvu1g1427 277 MobiDBLite consensus disorder prediction 190 277 - -
Pvu1g1427 277 SMART dnaj_3 22 80 IPR001623 -
Pvu1g1427 277 CDD DnaJ 25 77 IPR001623 -
Pvu1g1427 277 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 273 - -
Pvu1g1427 277 Pfam DnaJ domain 24 85 IPR001623 -
Pvu1g1427 277 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 3 273 IPR042977 -
Pvu1g1427 277 PRINTS DnaJ domain signature 25 43 IPR001623 -
Pvu1g1427 277 PRINTS DnaJ domain signature 43 58 IPR001623 -
Pvu1g1427 277 PRINTS DnaJ domain signature 60 80 IPR001623 -
Pvu1g1427 277 PRINTS DnaJ domain signature 80 99 IPR001623 -
Pvu1g1427 277 SUPERFAMILY Chaperone J-domain 20 103 IPR036869 -
Pvu1g1427 277 Gene3D DnaJ domain 7 109 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1427 Pvu-Chr1 38390367 38392991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1427 25 85 C2H2 Transcription Factor Family AT1G74250 37.879 1.36e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1427 K09529 - gmx:100793909 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1427 1 38390367 38392991 Pvu1g1427 1 38390367 38392991 ECH
Pvu1g1427 1 38390367 38392991 Pvu7g2635 7 49429907 49433092 PCT