Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1425 ATGGAGACAGAGAACGGTGACACGAAGTCCAAAAAGATGGAAGAATATGAAGTGATAGAGCAAATAGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAAAAGGAGGATCACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACTTGGCAGATAACATAAAGAAAGCTCGAGGGTCATATTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATCTTCCTCACCAAAGACAACAACATTCGGCTCGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTGGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCAGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTAGGAAAAACCCTGAGCATAGGCCAACCGCAGCTGAATTGTTAAGGCATCCGCTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCATCTAATATTCTTCCAGTATATCCTCTCGTTAATTCAAAGGATAAATCAAGAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAAGCTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATATACTCGTAAGCAATCTTCCTAATGATGCTGTTACAATCTCAACCAGTGCAGAAGACAATATTGAAACCAGGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGTAGACCTGCAAGGGAAACGGCTAACAACGAAATCTCTTTAAAGGGTACACAAGAATCTCCGCATGAGGAACAAATATTTGCAGCTAAACATTTTCATAATTTAGAAGATGACATTAATGCAGTGAGCGCAGAAGTTGAAGATGGTTCTTGCTATGAAGGTTTGGATAATGCTGAAGCACGGAGGGAAGATTCGAACCTTGACATCTCTGGTAAATCAACAATGTCCAGTGCAGGCAGTAGCAGCCCTGATAAAGATAAGTCCGTCAACGAGGAAAAACCATCACTAACTGTGACTCCTATTAGGGTTGGACATGATACCGAATCTGGAAACCACTTGAATGTATTTACGGAAGGGTCACATATGAACTGCTTGACATCTGATTGTAATGATGCACTTCCAGTGAAGGATGATGACAGAGCTAACAGACACATTCTCTGCACGCATAAAGATGATAACACGGTGGAGGTTGATGAGAAAAGTGGCGTTTCATTGAGTGTAATAACAGAAGTCGATGGTGATGAGACAATCACGACTCTGTTGGATAGTCCCTGCCAGCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTTTCTGGGGTTCTGAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATGTCTGCCCAAAAATTTAATCCTGAAACCTAG 1920 0.4167 METENGDTKSKKMEEYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDLADNIKKARGSYFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPLVNSKDKSRRSNKSSGGKDHKDKEASLVNRLERIHPIEGNGDILVSNLPNDAVTISTSAEDNIETRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKSRPARETANNEISLKGTQESPHEEQIFAAKHFHNLEDDINAVSAEVEDGSCYEGLDNAEARREDSNLDISGKSTMSSAGSSSPDKDKSVNEEKPSLTVTPIRVGHDTESGNHLNVFTEGSHMNCLTSDCNDALPVKDDDRANRHILCTHKDDNTVEVDEKSGVSLSVITEVDGDETITTLLDSPCQQRADALESLLELCAQLLKQDKLEELSGVLRPFGKEAVSSRETAIWLAKSLMSAQKFNPET* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1425 639 SUPERFAMILY Protein kinase-like (PK-like) 13 299 IPR011009 -
Pvu1g1425 639 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Pvu1g1425 639 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1425 639 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1425 639 MobiDBLite consensus disorder prediction 294 315 - -
Pvu1g1425 639 CDD STKc_Nek 16 270 - -
Pvu1g1425 639 MobiDBLite consensus disorder prediction 295 315 - -
Pvu1g1425 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Pvu1g1425 639 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1425 639 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Pvu1g1425 639 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 493 622 - -
Pvu1g1425 639 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 10 484 - -
Pvu1g1425 639 Gene3D Transferase(Phosphotransferase) domain 1 98 324 - -
Pvu1g1425 639 MobiDBLite consensus disorder prediction 462 477 - -
Pvu1g1425 639 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 493 622 - -
Pvu1g1425 639 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 10 484 - -
Pvu1g1425 639 MobiDBLite consensus disorder prediction 448 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1425 Pvu-Chr1 38380309 38387020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1425 9 271 MAP Kinase Kinase Kinase AT3G13530 33.585 1.68e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pvu1g1425 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1425 K08857 - gmx:100793379 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1425 1 38380309 38387020 Pvu1g1425 1 38380309 38387020 ECH
Pvu1g1425 1 38380309 38387020 Pvu7g2634 7 49415618 49423145 PCT