LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g1425	ATGGAGACAGAGAACGGTGACACGAAGTCCAAAAAGATGGAAGAATATGAAGTGATAGAGCAAATAGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAAAAGGAGGATCACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACTTGGCAGATAACATAAAGAAAGCTCGAGGGTCATATTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATCTTCCTCACCAAAGACAACAACATTCGGCTCGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTGGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCAGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTAGGAAAAACCCTGAGCATAGGCCAACCGCAGCTGAATTGTTAAGGCATCCGCTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCATCTAATATTCTTCCAGTATATCCTCTCGTTAATTCAAAGGATAAATCAAGAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAAGCTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATATACTCGTAAGCAATCTTCCTAATGATGCTGTTACAATCTCAACCAGTGCAGAAGACAATATTGAAACCAGGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGTAGACCTGCAAGGGAAACGGCTAACAACGAAATCTCTTTAAAGGGTACACAAGAATCTCCGCATGAGGAACAAATATTTGCAGCTAAACATTTTCATAATTTAGAAGATGACATTAATGCAGTGAGCGCAGAAGTTGAAGATGGTTCTTGCTATGAAGGTTTGGATAATGCTGAAGCACGGAGGGAAGATTCGAACCTTGACATCTCTGGTAAATCAACAATGTCCAGTGCAGGCAGTAGCAGCCCTGATAAAGATAAGTCCGTCAACGAGGAAAAACCATCACTAACTGTGACTCCTATTAGGGTTGGACATGATACCGAATCTGGAAACCACTTGAATGTATTTACGGAAGGGTCACATATGAACTGCTTGACATCTGATTGTAATGATGCACTTCCAGTGAAGGATGATGACAGAGCTAACAGACACATTCTCTGCACGCATAAAGATGATAACACGGTGGAGGTTGATGAGAAAAGTGGCGTTTCATTGAGTGTAATAACAGAAGTCGATGGTGATGAGACAATCACGACTCTGTTGGATAGTCCCTGCCAGCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTTTCTGGGGTTCTGAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATGTCTGCCCAAAAATTTAATCCTGAAACCTAG	1920	0.4167	METENGDTKSKKMEEYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDLADNIKKARGSYFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPLVNSKDKSRRSNKSSGGKDHKDKEASLVNRLERIHPIEGNGDILVSNLPNDAVTISTSAEDNIETRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKSRPARETANNEISLKGTQESPHEEQIFAAKHFHNLEDDINAVSAEVEDGSCYEGLDNAEARREDSNLDISGKSTMSSAGSSSPDKDKSVNEEKPSLTVTPIRVGHDTESGNHLNVFTEGSHMNCLTSDCNDALPVKDDDRANRHILCTHKDDNTVEVDEKSGVSLSVITEVDGDETITTLLDSPCQQRADALESLLELCAQLLKQDKLEELSGVLRPFGKEAVSSRETAIWLAKSLMSAQKFNPET*	640

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu1g1425	639	SUPERFAMILY	Protein kinase-like (PK-like)	13	299	IPR011009	-
Pvu1g1425	639	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524
Pvu1g1425	639	SMART	serkin_6	16	270	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pvu1g1425	639	ProSiteProfiles	Protein kinase domain profile.	16	270	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pvu1g1425	639	MobiDBLite	consensus disorder prediction	294	315	-	-
Pvu1g1425	639	CDD	STKc_Nek	16	270	-	-
Pvu1g1425	639	MobiDBLite	consensus disorder prediction	295	315	-	-
Pvu1g1425	639	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	137	149	IPR008271	GO:0004672\|GO:0006468
Pvu1g1425	639	Pfam	Protein kinase domain	16	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pvu1g1425	639	Gene3D	Phosphorylase Kinase; domain 1	1	95	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g1425	Pvu-Chr1	38380309	38387020	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g1425	9	271	MAP Kinase Kinase Kinase	AT3G13530	33.585	1.68e-38	151

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Pvu1g1425		Pkinase	2.4e-68	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g1425	K08857		-	gmx:100793379	1100.89

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g1425	1	38380309	38387020	Pvu1g1425	1	38380309	38387020	ECH
	Pvu1g1425	1	38380309	38387020	Pvu7g2634	7	49415618	49423145	PCT

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