Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1422 ATGGCTGACCCCTACTCCAATTTTTTCTCATCCTCACCCTTCTTCCGCTTCAATCACCATTTCCCATCTTCAAACCCTTCTCCTCACGCTCCCTATGTCCACAACTTCATCAACCACTCCAAAACCAACGACACAACCTTTTTCCAATACCACCACCACAACCATACTTCTTCCACAACTACTACTTTTTCTTCTTTTCCTCCTTCCCCTCCTCTGAGAGAAGAACTACCCCTCTTGAGACTTAGTCCGGCCAAGCAAGAGGAAGAGGAGGAGGACCTGTCTTGTACTGGAGCCATGGATGTGGAGGAGAGGATCCACATCCACCCCAAAGAGGAAGAAGATGATGAAGATGGCACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTGCTCTCTTCTTCCTCAGAGACCACTGACAAAGATCATGGAGATGGTGCTGCTGAGGATTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGTACCCAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGAAACAACATTGATCACCCAAGATCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAAAGGAAGCATGGGATTAAACCTTTCATGTGCAGGAAATGCGGCAAGGCTTTTGCGGTGAGGGGAGATTGGAGGACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGCATCTGCGGTTCCGATTTCAAGCACAAGAGATCTCTTAAAGACCATATTAAAGCTTTTGGAAGTGGCCATGCAGCCTATGGAATCGATGGTTTTGAAGAAGAAGATGAGCCAGCATCTGAAGTAGAGCAAGATAATGATGATTCTACCCAGTGA 1044 0.4761 MADPYSNFFSSSPFFRFNHHFPSSNPSPHAPYVHNFINHSKTNDTTFFQYHHHNHTSSTTTTFSSFPPSPPLREELPLLRLSPAKQEEEEEDLSCTGAMDVEERIHIHPKEEEDDEDGTVTVALHIGLPSPSAAEMASVLSSSSETTDKDHGDGAAEDSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1422 347 PANTHER ZINC FINGER PROTEIN WIP2 1 346 IPR043584 GO:0003700|GO:0010468
Pvu1g1422 347 ProSitePatterns Zinc finger C2H2 type domain signature. 187 207 IPR013087 -
Pvu1g1422 347 Gene3D Classic Zinc Finger 184 207 - -
Pvu1g1422 347 MobiDBLite consensus disorder prediction 133 160 - -
Pvu1g1422 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 289 IPR013087 -
Pvu1g1422 347 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 346 - -
Pvu1g1422 347 SMART c2h2final6 185 207 IPR013087 -
Pvu1g1422 347 SMART c2h2final6 269 289 IPR013087 -
Pvu1g1422 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 212 IPR013087 -
Pvu1g1422 347 SUPERFAMILY beta-beta-alpha zinc fingers 250 289 IPR036236 -
Pvu1g1422 347 Gene3D Classic Zinc Finger 247 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1422 Pvu-Chr1 38316315 38318940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1422 1 344 C2H2 Transcription Factor Family AT3G57670 61.658 7.16e-146 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g1422 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1422 - - gmx:100802907 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1422 1 38316315 38318940 Pvu1g1422 1 38316315 38318940 ECH
Pvu1g1422 1 38316315 38318940 Pvu5g1533 5 37617397 37619615 ECH
Pvu1g1422 1 38316315 38318940 Pvu7g2630 7 49378555 49381137 PCT