Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1416 ATGGATACTTGCAAGAAGTCCCCCCTGAAGCCATGGAAGAAAGGACCAACTAGGGGGAAAGGTGGTCCCCAGAATGCCTCTTGCGAGTACCGAGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATAGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCACCTGCTGCCCAGGTCTACCTCACCTATTACACCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCCATGTTCCCTTCCTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAAGAACTTAAGCAAAATACAGTTGAGAGGCAATCCCCAAATAGCACATTCAATGATCCAGAGGCAGAAATTCAGAATGTAGACGCCACGAATGATGGAGAAAGTCCTCCAAAAGACTCTCAAACATCATCATCAGAGGTTCTAGGAGATCTTCAAGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGCTAGGAATACTTAAAGAAGAAAGACAGTCAAACAGAACTGATAGCACAGAAAGTTCAACAGTGCCTGAAGCTGTGTTGAGAGATGACAATGATGAATTGGGAGTGTTTTCTGACACGAGTCTTAACTGGGAGGCATTGATTGAGATGCATGGAATAGCAGGTATTGAGGAATTAGAGTCCACCCAGCTTGAAGCATATGGCCCAAATGATGACCTTACTTTCTCAACTTCCATTTGGAACTTCTAG 843 0.4472 MDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAIAYDEAARRLYGPDAYLNLPHLLPRSTSPITPGKFKWFPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQELKQNTVERQSPNSTFNDPEAEIQNVDATNDGESPPKDSQTSSSEVLGDLQEKPQIDLHEFLQQLGILKEERQSNRTDSTESSTVPEAVLRDDNDELGVFSDTSLNWEALIEMHGIAGIEELESTQLEAYGPNDDLTFSTSIWNF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1416 280 MobiDBLite consensus disorder prediction 141 182 - -
Pvu1g1416 280 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Pvu1g1416 280 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Pvu1g1416 280 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 277 - -
Pvu1g1416 280 MobiDBLite consensus disorder prediction 1 27 - -
Pvu1g1416 280 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Pvu1g1416 280 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Pvu1g1416 280 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Pvu1g1416 280 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Pvu1g1416 280 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Pvu1g1416 280 MobiDBLite consensus disorder prediction 204 225 - -
Pvu1g1416 280 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 277 - -
Pvu1g1416 280 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1416 Pvu-Chr1 38195399 38196241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1416 5 280 AP2-EREBP Transcription Factor Family AT3G57600 52.650 6.53e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu1g1416 AP2 9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1416 - - var:108328773 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1416 1 38195399 38196241 Pvu1g1416 1 38195399 38196241 ECH
Pvu1g1416 1 38195399 38196241 Pvu7g2626 7 49321858 49323149 PCT