Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1404 ATGGGGACTCCGGAATTCCCAAATCTCGGCAAGCATTGTTCTGTTTCCGATTGCAGGCAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGTAATCAGATATATTGTTTGGAACACAGAGGTTATATTGAACACAAGTGCACAAAGCCCAACAAAGAAGATGTCACAGTTGTCATATGTCCTCTTTGTGCCAAAGGAGTTCGCCTCATTCCAGATCAAGATCCCAACATAACTTGGGACCATCATGTTAACATTGATTGTGACCCATCAAATTATGAAAAAGTGACAAAGAAGAGAAAATGCCCTGCCCCTGGATGCAGAGAGGTGTTGGTATTCTCCAACACAATCAAATGCAGGGATTGCTTGGAAGACCATTGTTTGAAGCACCGGTTTGGTTCTGATCACAAATGTTCCGGTCCCAAAAAGTTGGAGACAAGTTTTTCATTCATGGGTTTTTTTAATACGACTAAACAAGAGGAGACAAAGCCCAATTTAACTTCAACAGCATCATCTAACTGGACTTCAAGCTTTCTCCACGTGGCTTCTAATATTCGTGCCTCAGCTGAAGCGAGCATGTCAAAATTTAACCAAGTTTGGCTGTCAGCTAGAGATGGTGTGGGACAAAGCAATGGCAGTGGAAATAGAAATGATGATCAAGGGGAGCATTGCCCTCAATGTGGTGTAAAGTTTTCCTCTAAGACTTCTTTGGTGGATCATGTGCAAAAAGTTCATGAAAGCAATGGGAAACAATTAGGGGTTAAGAAGATTGATGCATGCCCCAAGTGTAGTAGAGGGTTTGTAGATCCAGTGTCCCTTGCGGAGCATGTTGAGAGGGATCATGGTGGTGGTTGTGGAGCTTAG 861 0.4332 MGTPEFPNLGKHCSVSDCRQLDFLPFTCDRCNQIYCLEHRGYIEHKCTKPNKEDVTVVICPLCAKGVRLIPDQDPNITWDHHVNIDCDPSNYEKVTKKRKCPAPGCREVLVFSNTIKCRDCLEDHCLKHRFGSDHKCSGPKKLETSFSFMGFFNTTKQEETKPNLTSTASSNWTSSFLHVASNIRASAEASMSKFNQVWLSARDGVGQSNGSGNRNDDQGEHCPQCGVKFSSKTSLVDHVQKVHESNGKQLGVKKIDACPKCSRGFVDPVSLAEHVERDHGGGCGA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1404 286 ProSitePatterns Zinc finger C2H2 type domain signature. 259 280 IPR013087 -
Pvu1g1404 286 SUPERFAMILY beta-beta-alpha zinc fingers 222 276 IPR036236 -
Pvu1g1404 286 ProSitePatterns Zinc finger C2H2 type domain signature. 223 244 IPR013087 -
Pvu1g1404 286 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 283 - -
Pvu1g1404 286 Gene3D Classic Zinc Finger 201 283 - -
Pvu1g1404 286 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Pvu1g1404 286 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Pvu1g1404 286 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Pvu1g1404 286 Pfam zinc-finger C2H2-type 222 244 IPR041697 -
Pvu1g1404 286 SMART c2h2final6 221 244 IPR013087 -
Pvu1g1404 286 SMART c2h2final6 257 280 IPR013087 -
Pvu1g1404 286 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Pvu1g1404 286 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Pvu1g1404 286 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Pvu1g1404 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 249 IPR013087 -
Pvu1g1404 286 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 283 - -
Pvu1g1404 286 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Pvu1g1404 286 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Pvu1g1404 286 Gene3D - 87 169 IPR035896 -
Pvu1g1404 286 Gene3D - 2 58 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1404 Pvu-Chr1 37969769 37971616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1404 1 286 C2H2 Transcription Factor Family AT2G41835 58.131 4.27e-110 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g1404 zf-AN1 8.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1404 - - gmx:100806459 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1404 1 37969769 37971616 Pvu1g1404 1 37969769 37971616 ECH
Pvu1g1404 1 37969769 37971616 Pvu7g2604 7 49148213 49151520 PCT