Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1401 ATGGAAGCTCTATGCTTGTTACACATTCTCCTAGCTTGGTGTCTGTCATGTTTTGAGCTTGTTGGTGCTGAGCTTCAGGAGCAAGCTGTATTACAGGCCATCAACCAAGAGCTTAGAGTCCCTGGATGGGGGGATGCCAACAACTCAGATTACTGCAGTTGGCAAGGTGTCAACTGTGGTAACCACTCATTGGTGGAGAGCTTGGATCTGTCTCACCGGAATCTTCGAGGTAATGTAACTTTAATGTCTGAGCTCAAAGCATTGAAGCGGCTTGATCTTTCAAATAATAACTTTGATGGATTGATTCCACGTGCTTTTGGAAATTTATCTGATCTTGAAGTTTTAGATTTGTCTTCAAATAAGTTCCAGGGTTCAATTCCACCTCAGTTGGGTGGTCTCAGAAACCTCAAATCATTGAACCTTTCCAATAATGTGCTTGTGGGAGAAATACCAATGGAACTTCAGGGCTTAGAGAAATTGCAAGATTTTCAAATTTCTAGTAACCATTTGAGTGGTCTTATACCTTCCTGGGTGGGAAATTTAACTAATCTGAGGCTTTTCACTGCTTATGAGAACCGTTTAGATGGCAGGATTCCTGATGATCTAGGCTCAATTTCTGAGCTTCAAATACTTAACTTGCACTCTAACCAGCTTGAAGGTTCAATACCAGCTACCATTTTCGTTCCAGGGAAGCTGGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGCGAACTGCCTAAGGAAATTGGGAATTGCAAAGCCCTTTCCAGCGTTCGAATTGGATTCAACCATCTAGTAGGTACAATTCCTAAGACCATTGGAAATCTTACTAGCCTAACCTACTTTGAAGCTGACAATAATAATCTTTCTGGTGAGGTTGTGTCAGAATTTTCTCAGTGTTCTAATCTTACCCTCTTGAATTTGGCTTCAAATGGATTTACTGGAACAATTCCGCAAGACTTCGGACAACTTATGAATCTTCAGGAATTAATTCTTTCTGGAAATAGCCTATTTGGCGATATTCCAATATCAATTCTGAGTTGCAAAAATCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATCACCCGGTTGCAGTACTTGCTGTTGGATCAGAATTTCATAAGAGGAGAGATCCCCCATGAAATTGGTAATTGTGCAAAACTTCTTGAATTACAATTGGGCAGTAATATTTTGACTGGAACTATTCCTCCTGAGATTGGGCGCATTAGGAACTTGCAGATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGACTTCTGCCCCCTGAATTGGGAAAACTGGACAAACTTGTTTCACTGGATGTTTCAAACAATCGGCTATCAGGTAATATCCCACCTGAACTTAAGGGAATGTTGAGTTTGATAGAGGTGAACTTCTCAAATAATCTGCTAGGAGGCTTGGTGCCAACATTTGTACCATTCCAAAAGAGTCCTAGTTCAAGTTTTTTGGGCAACAAAGGGCTTTGTGGAGAGCCTCTGAACCCTTCATGTGGAACCCTTTATGATGATCACAAGGCTTACCATCATCGGGTTTCTTACAGAATCATACTAGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCAGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGGAATTGTTGATGATAGCACCAATGACAACCCAACTATAATTGCAGGAACTGTTTTTGTTGATAATCTCAAACAAGCGGTAGACCTTGATGCTGTCGTTAAAGCAACTCTGAAAGACTCAAATAAGCTCAGCGGCGGAACTTTCAGCACAGTTTACAAGGCAATCATGCCTTCTGGGGTGGTCTTATCTGTTAGGAGATTGAAGTCTGTAGACAAGACAATAATCCACCATCAGAACAAAATGATTAGAGAACTTGAAAGACTGAGCAAAGTTTGTCATGATAATCTTGTGCGTCCCATTGGCTATGTCATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCCAATGGAACATTGGTTCAGCTTCTTCATGAATCTACCCGGAAACCTGAATATCAACCTGACTGGCCTTCTAGACTGTCCATTGCCATTGGTGTGGCAGAAGGTTTGGCTTTCCTTCATCATGTGGCAATCATCCATCTTGACATTTCTTCAGGCAATGTTCTCTTGGATGCAAATTTCAAGCCGTTAGTTGGGGAGATAGAGATTTCAAAACTTCTGGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCCTTTGGTTACATACCACCAGAATATGCATATACTATGCAAGTAACAGCACCAGGAAATGTTTATAGCTACGGTGTTGTTCTGTTGGAGATCCTCACAACTAGATTACCAGTTGATGAGGATTTTGGTGAAGGTGTAGATTTGGTGAAATGGGTTCACAGTGCTCCAGTGAGAGGGGAAACTCCAGAGCAGATATTGGATGCCAGGCTTAGCACAGTTTCTTTTGGTTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTTGCCTTGCTGTGCACGGACAACACACCAGCCAAACGACCGAAAATGAAGAATGTAGTGGAAATGCTGCGAGAGATAAAACAAAACTGA 2664 0.4107 MEALCLLHILLAWCLSCFELVGAELQEQAVLQAINQELRVPGWGDANNSDYCSWQGVNCGNHSLVESLDLSHRNLRGNVTLMSELKALKRLDLSNNNFDGLIPRAFGNLSDLEVLDLSSNKFQGSIPPQLGGLRNLKSLNLSNNVLVGEIPMELQGLEKLQDFQISSNHLSGLIPSWVGNLTNLRLFTAYENRLDGRIPDDLGSISELQILNLHSNQLEGSIPATIFVPGKLEVLVLTQNNFSGELPKEIGNCKALSSVRIGFNHLVGTIPKTIGNLTSLTYFEADNNNLSGEVVSEFSQCSNLTLLNLASNGFTGTIPQDFGQLMNLQELILSGNSLFGDIPISILSCKNLNKLDISNNRFNGTIPNEICNITRLQYLLLDQNFIRGEIPHEIGNCAKLLELQLGSNILTGTIPPEIGRIRNLQIALNLSFNHLHGLLPPELGKLDKLVSLDVSNNRLSGNIPPELKGMLSLIEVNFSNNLLGGLVPTFVPFQKSPSSSFLGNKGLCGEPLNPSCGTLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAGIVDDSTNDNPTIIAGTVFVDNLKQAVDLDAVVKATLKDSNKLSGGTFSTVYKAIMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHHYFPNGTLVQLLHESTRKPEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIKQN* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1401 887 SMART LRR_typ_2 205 229 IPR003591 -
Pvu1g1401 887 SMART LRR_typ_2 446 469 IPR003591 -
Pvu1g1401 887 SMART LRR_typ_2 85 108 IPR003591 -
Pvu1g1401 887 SMART LRR_typ_2 373 397 IPR003591 -
Pvu1g1401 887 SMART LRR_typ_2 157 180 IPR003591 -
Pvu1g1401 887 SMART LRR_typ_2 325 349 IPR003591 -
Pvu1g1401 887 SMART LRR_typ_2 109 133 IPR003591 -
Pvu1g1401 887 Gene3D Phosphorylase Kinase; domain 1 574 684 - -
Pvu1g1401 887 SUPERFAMILY Protein kinase-like (PK-like) 606 884 IPR011009 -
Pvu1g1401 887 SUPERFAMILY L domain-like 46 293 - -
Pvu1g1401 887 SUPERFAMILY L domain-like 198 511 - -
Pvu1g1401 887 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Pvu1g1401 887 ProSiteProfiles Protein kinase domain profile. 606 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g1401 887 Gene3D Ribonuclease Inhibitor 176 227 IPR032675 -
Pvu1g1401 887 Pfam Protein tyrosine and serine/threonine kinase 609 881 IPR001245 GO:0004672|GO:0006468
Pvu1g1401 887 PRINTS Leucine-rich repeat signature 88 101 - -
Pvu1g1401 887 PRINTS Leucine-rich repeat signature 109 122 - -
Pvu1g1401 887 Gene3D Ribonuclease Inhibitor 25 175 IPR032675 -
Pvu1g1401 887 Gene3D Ribonuclease Inhibitor 228 518 IPR032675 -
Pvu1g1401 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 729 741 IPR008266 GO:0004672|GO:0006468
Pvu1g1401 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 2 885 - -
Pvu1g1401 887 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 885 - -
Pvu1g1401 887 Gene3D Transferase(Phosphotransferase) domain 1 685 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1401 Pvu-Chr1 37948400 37952635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1401 1 886 Receptor kinase-like Gene Family AT2G41820 72.778 0.0 1300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pvu1g1401 PK_Tyr_Ser-Thr 5.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1401 - - gmx:100789684 1643.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1401 1 37948400 37952635 Pvu1g1401 1 37948400 37952635 ECH