Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1389 ATGGCCGAATCATTTCTCTTCAGCATCGCAGAGTCACTCATAGCAAAGATTGCTTCTCATGCTTTTCAAGAAGCTTCTCGATTGGTGGGTTTATATGACAATCTTCGAGACCTTACAAAGACTCTCTCTTTAGTCAAGGCTGTGCTGTTAGATGCTCAGCAAAAGCAGGAGCACAACCATCAGCTGCGCGAATGGCTCACTCAGCTCAAGACTATCTTCTCCGATGCCGAAGATCTTTTGGATGAATTTGAGTGCCAAACACTGCGAAAGAAAGTGGTCAAAGCTCATGGTAGCACCAAAGACAAGGTAAGTCACTTCTTCTCAACCTCTAATCCACTTCTCTTTCGTTACAAAATGGCTCAACAAATTAAAGATATCAGCAAAAGACTAGATAAGGTTGCAGCTGATAGGCATAAATTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCCCGTGTCAGTGATTCGGATGTCGTAGGAAGGAAACACGATAAAGAAAAGATAATAGAGCTTTTGATGCCACAAAATCCGAATGATGATGCAAGTCTTTCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAGACTACGCTTGCAAAGTTTGTGTTCAATGACAGCAGGATCCAGGAGTATTTTCCATTGATGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAACAACTGATTATCAAAATCATCAATTCTGCCAATGAGCAAGATGCTCCTCCTCACCAACAGAATTTGAACATGTTGGATCTGGAGCAACTGCAAAATCAACTGAAAAACAAACTTTCCTCTCAAAAATTCTTACTCGTCTTAGACGATGTATGGAACGAAGATCGTGTTAAATGGGTTGAGCTGAGGAATTTAATCCAAGTAAGTGCAGCAGGAAGTAAAATCCTTGTGACCACACGTAGTCATTCAATTGCTTCCATGATGGGCTCAGTTCCCTCTCACATTTTAGAAGGTCTTTCTAACGAGGATTCATTGTCTCTCTTTGTCAAGTGGGCATTTAAAGAAGGAGAAGAGGAAAATCATCCTCACTTACTAATCATTGCGAGAGAAATTGTGAAAAAATGCAGAGGAGTCCCATTGGCAGTGAGAACATTAGGGAGTTTACTATTCTCAAAATTTGAGGTTAGTGAATGGGAATATGTTTGTGATAATGAAATTTGGAATTTGCCTCAGAAAAAGGATGACATTTTACCTGCCCTTAAATTAAGTTATGATCTTATGCCATCATATTTGAGACAATGTTTTGCAATATTTTCTCTTTACCCAAAGGACTATGAACTTAATAGTTATGAAATAACTTCAGTTTGGGGGGCACTTGGACTCATAGCATTACCAAAAAAGAACAGGACACTTGAAGATGTGGCCAATCAATATTTGCATGAACTTCTGTCAAGATCTTTTCTTCAAGATTTTACAAGCTTTGGCTCTGTTTATCGTTTTACAATACATGATTTGGTGCATGATCTCGCTCTATTTGTTGCAAAGGATGAATCTCTATATGTAAGTTCCAGAATTCAAAATATTCCAGATAATGTTCGACATCTGTCTTTTGCTGAAAGCAGTTTGTTTAGCAATTTATACAACAAAAAATCGGTAGCTGTGAAAACCATATTGTTTCCAAACGGTACAGAAGAAACCAGCGATGAAGCTTTAATAAATACTTGTCTGTCAAAGTTCAAATATTTGCGAGTTTTGGATTTATGGTCTTCGACAATCGAGACTTTGCCCCATACCATTGCTAAGTTGAAACATTTGAGATATTTGGACATTGGCAAAAATCGCAACATTAAGAGACTCCCCGAGTCTATTTGCAAGCTCCAAAGTCTGCAAGTGTTAAGGCTTGACGGATGCATAGAGCTGGAAGCATTGCCAATAGGATTAAGAAAGTTAATCAGTCTCAGGCATTTAGAGTTCAGCACAAAGCAATCTATTTTGCCTGACAATGAGATTGCTAGTCTGGACTTGCTTGCAAATCTGTCTATTGAATCATGCCATAATTTGGGGTCTATATTCGGAGATGTGAAATTTCCTGTTCTTAAAGCATTGTATATTGGTAATTGTGAGAGTCTAAAGTCTTTTCAGCTTGATGGTAAAAAATTTCCTGAATTAGAAACATTGGGTGTTAATTCCTGCAGTAATTTGGACTTGGAACTCTGGAAGGGCAACCACCTTGAAGGACAAAGCCACAAGCTAAAGTTAAAAACTATTCTACTTTCAAATTTATCACAGCTAGTGACCTTGCCTAAATGGCTTCACGAAGCTGCCAACTCCTTACAGTGCTTGATAATTGAAAATTGCGACAATATTGAAACACTTCCAGATTGGTTTACAACTATGACTGACCTGAAAACACTTTCTATAACGTCTTGTCTAAGTTTGGTATCTCTCCCGGATAACATTCATCACCTAACTGCACTTGAAACTTTGAGGATTGAAGGTTGTCATGATTTATGTGAAAAATATCAACCCCGTGTTGGAGAGTTTTGGCCCAAAATATCACACATAAAAAACATTTACATTGATGAACCAGAAGTCCGAGAAGAATTACAGGAAGAGCAAGACGAAGAGGAAATGCATTAA 2628 0.3839 MAESFLFSIAESLIAKIASHAFQEASRLVGLYDNLRDLTKTLSLVKAVLLDAQQKQEHNHQLREWLTQLKTIFSDAEDLLDEFECQTLRKKVVKAHGSTKDKVSHFFSTSNPLLFRYKMAQQIKDISKRLDKVAADRHKFSLQIIDVDTRVVHRRDMTHSRVSDSDVVGRKHDKEKIIELLMPQNPNDDASLSVIPIVGIGGLGKTTLAKFVFNDSRIQEYFPLMMWVCVSDDFDIKQLIIKIINSANEQDAPPHQQNLNMLDLEQLQNQLKNKLSSQKFLLVLDDVWNEDRVKWVELRNLIQVSAAGSKILVTTRSHSIASMMGSVPSHILEGLSNEDSLSLFVKWAFKEGEEENHPHLLIIAREIVKKCRGVPLAVRTLGSLLFSKFEVSEWEYVCDNEIWNLPQKKDDILPALKLSYDLMPSYLRQCFAIFSLYPKDYELNSYEITSVWGALGLIALPKKNRTLEDVANQYLHELLSRSFLQDFTSFGSVYRFTIHDLVHDLALFVAKDESLYVSSRIQNIPDNVRHLSFAESSLFSNLYNKKSVAVKTILFPNGTEETSDEALINTCLSKFKYLRVLDLWSSTIETLPHTIAKLKHLRYLDIGKNRNIKRLPESICKLQSLQVLRLDGCIELEALPIGLRKLISLRHLEFSTKQSILPDNEIASLDLLANLSIESCHNLGSIFGDVKFPVLKALYIGNCESLKSFQLDGKKFPELETLGVNSCSNLDLELWKGNHLEGQSHKLKLKTILLSNLSQLVTLPKWLHEAANSLQCLIIENCDNIETLPDWFTTMTDLKTLSITSCLSLVSLPDNIHHLTALETLRIEGCHDLCEKYQPRVGEFWPKISHIKNIYIDEPEVREELQEEQDEEEMH* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1389 875 Pfam NB-ARC domain 171 421 IPR002182 GO:0043531
Pvu1g1389 875 CDD RX-CC_like 2 134 IPR038005 -
Pvu1g1389 875 PRINTS Disease resistance protein signature 194 209 - -
Pvu1g1389 875 PRINTS Disease resistance protein signature 274 288 - -
Pvu1g1389 875 PRINTS Disease resistance protein signature 371 385 - -
Pvu1g1389 875 PRINTS Disease resistance protein signature 596 612 - -
Pvu1g1389 875 Gene3D Ribonuclease Inhibitor 734 845 IPR032675 -
Pvu1g1389 875 Gene3D Ribonuclease Inhibitor 518 733 IPR032675 -
Pvu1g1389 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 432 IPR027417 -
Pvu1g1389 875 Gene3D - 419 507 IPR036388 -
Pvu1g1389 875 Gene3D - 10 124 - -
Pvu1g1389 875 PANTHER DISEASE RESISTANCE PROTEIN RP 2 658 IPR044974 GO:0006952
Pvu1g1389 875 PANTHER DISEASE RESISTANCE PROTEIN RP 687 828 IPR044974 GO:0006952
Pvu1g1389 875 Gene3D - 149 329 IPR027417 -
Pvu1g1389 875 SUPERFAMILY L domain-like 498 856 - -
Pvu1g1389 875 PANTHER OS01G0808000 PROTEIN 687 828 - -
Pvu1g1389 875 PANTHER OS01G0808000 PROTEIN 2 658 - -
Pvu1g1389 875 Pfam Rx N-terminal domain 11 98 IPR041118 -
Pvu1g1389 875 Pfam Leucine rich repeat 577 633 IPR001611 GO:0005515
Pvu1g1389 875 Gene3D - 334 418 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1389 Pvu-Chr1 37691162 37693789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1389 578 655 WRKY Transcription Factor Family AT4G12020 38.462 4.17e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1389 - - pvu:PHAVU_001G133600g 1339.71