Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1380 ATGAGTTATTCCCATGTTGATGCTTCAGGGGTGATTGGAAGGGAGAGTGATAGAGAAGAAATTATTAATCTTTTGATGCAACCTCACCCTCATGGTGATGGTTATGGAGATCAAAGTGTTTGTGTTATTCCCATAGTGGGTATTGGAGGGTTGGGGAAGACCACACTTGCGAAGTTGGTTTTCAATGATAAGAGAATGGATGATCTTTTCCAGTTGAAGATGTGGGTGTGTATCTCTGATGACTTTGACATAAGACAGATAATTATTAAAATAATCAACTCTGCTTCAGCTTCGGCTCCAACTATTGCTCTTGCTCACCAAGAAAACAATAAAAACTTTGATATTGAGCAGCTACAAAGTCGTCTTAGACACAGGCTTTCTGGTCAGAAGTATTTGCTAGTCTTGGATGATATATGGAATGATAATCGAGCAAAATGGACAGAGTTGAAAGATTTAATTAAAGTGGGTGCAATTGGAAGCAAAATCTTGGTGACAACACGAAGTAATTCAATTGCTACAATGATGGGCACTGTTCCCTCGTATGTTTTGGAAGGTCTTTCCATGGAGAATTGTTATTCTCTGTTTAACAAATGGGCATTTAAGGAAGGCGAAGAAAAAAAATATTCAAATCTAGTAGAGATTGGAAAAGAAATTGTGAATAAATGTAGAGGGGTTCCACTAGCAGTGCGAACTTTAGGAAGTTCTCTGTTCTTAAATTTTAATTCAGAAAGGTGGGAGTTTGTGAGAGACCATGGCATATGGAACTTAAAACAAGAAAAAGATGACATTTTACCTGCTCTTAAGTTGAGCTATGACCAAATGCCTTCCTATTTGAGACACTGTTTTGCTTTCTTTTCTCTTTATCCAAAAGATTATGGCTGTACTGGTGCTGAAGTTGTTAACCTTTGGGCGGCACTTGGCTTACTTAGATCTGAGGTTGGAAGTCAAAAGATAGAGAATACTGCAAGACAGTATATAGACGAGTTACATTCGAGATCATTTCTTGAGGATTTTGAGGACTTTGGTCACCTTTACTATTTCAAAGTGCATGATTTGGTACATGATCTTGCCCAGTATGTTGCAAAAGAAGAGATTCTTGTGGTAAACTCAGTTACCCGGAATATACCTGAGCAAGTAAGGCATTTATCAGTTGTTGAAAATGATTCACTTAGCCATGCTTTGTTCCCCAAGTCCAGTAGTGTGAGAACTATATTATTTCCAATAGTTGGAGTTGGTGTTGATAATGTAGCTCTTTTGGATGCATGGATAACAAGATACAAATTCTTGCGTATTTTAGATTTAAGCGATTCTTCTCTTGAGACACTTCCCAATTCAATTGCTAAACTGGAGCATCTGCGAGCTCTCAGTCTTGAAAATAACCGCAACATAAAAAGACTTCCTCATTCTATATGCAAACTCCAAAATTTGCAAGCTTTGTCTTTGAGAGGATGTGTGGAGCTTGAAACATTGCCTAAAGGATTAGGGATGTTAATCAGCCTTCGAAAATTGTTTATCACCACAAAACAGTCTATTCTGCCAGAGGAGGAATTTGCAAGTTTGATGAATCTTCATACTTTGAGTTTTGAATTTTGTGACAATTTGATGTTTCTGTTCCGAGGGGCACAACAACTCACATCCCTTGAAATTTTGATTGTTCAATCATGTAGGAGGCTAGAGTCCTTTCCTTTTCATATTCTCCCTAAACTGGAGGTTCTGTTTGTCATAAGGTGTGAGATGCTAAATCTGTCCTTGGACTGTGAAAAACCAATCCACAGTTTGAGGATGAAGTTTCTGCATATTGAGCAATGTCCAAGGCAACAGACATTGCCTCAATGGATTGAAGGAGCTTCCGACACTTTGCAGACATTGTTAATTTCAAATTGGCATAGTCTTGAGATGCTTCCTGAGTGGCTTACAGCAATGACTCGTCTTAAGATTCTTCATATTGTTAACTGTCCTCAGCTGTGTTGTCTCCCGAGTGGCATGCATCGCCTCCGTTCCCTTGAAGATTTGAGCATAGACGGTTGTTCCGAATTGAGTCGAAAATGTGAACCTCAATGTGGTGAGTACTGGTCCTTCATTGCTCACATCAAACACCTTTCCATTGGTGAAACAAGAGAACGGAAACTCCTTTTCCAAATGCAGAAGAAGATCCGCTTGAAATTGCAGATATAA 2175 0.3885 MSYSHVDASGVIGRESDREEIINLLMQPHPHGDGYGDQSVCVIPIVGIGGLGKTTLAKLVFNDKRMDDLFQLKMWVCISDDFDIRQIIIKIINSASASAPTIALAHQENNKNFDIEQLQSRLRHRLSGQKYLLVLDDIWNDNRAKWTELKDLIKVGAIGSKILVTTRSNSIATMMGTVPSYVLEGLSMENCYSLFNKWAFKEGEEKKYSNLVEIGKEIVNKCRGVPLAVRTLGSSLFLNFNSERWEFVRDHGIWNLKQEKDDILPALKLSYDQMPSYLRHCFAFFSLYPKDYGCTGAEVVNLWAALGLLRSEVGSQKIENTARQYIDELHSRSFLEDFEDFGHLYYFKVHDLVHDLAQYVAKEEILVVNSVTRNIPEQVRHLSVVENDSLSHALFPKSSSVRTILFPIVGVGVDNVALLDAWITRYKFLRILDLSDSSLETLPNSIAKLEHLRALSLENNRNIKRLPHSICKLQNLQALSLRGCVELETLPKGLGMLISLRKLFITTKQSILPEEEFASLMNLHTLSFEFCDNLMFLFRGAQQLTSLEILIVQSCRRLESFPFHILPKLEVLFVIRCEMLNLSLDCEKPIHSLRMKFLHIEQCPRQQTLPQWIEGASDTLQTLLISNWHSLEMLPEWLTAMTRLKILHIVNCPQLCCLPSGMHRLRSLEDLSIDGCSELSRKCEPQCGEYWSFIAHIKHLSIGETRERKLLFQMQKKIRLKLQI* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1380 724 PRINTS Disease resistance protein signature 42 57 - -
Pvu1g1380 724 PRINTS Disease resistance protein signature 125 139 - -
Pvu1g1380 724 PRINTS Disease resistance protein signature 222 236 - -
Pvu1g1380 724 PRINTS Disease resistance protein signature 663 679 - -
Pvu1g1380 724 Pfam Leucine rich repeat 429 484 IPR001611 GO:0005515
Pvu1g1380 724 Gene3D - 5 180 IPR027417 -
Pvu1g1380 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 284 IPR027417 -
Pvu1g1380 724 Pfam NB-ARC domain 37 272 IPR002182 GO:0043531
Pvu1g1380 724 PANTHER DISEASE RESISTANCE PROTEIN RP 12 632 IPR044974 GO:0006952
Pvu1g1380 724 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 12 632 - -
Pvu1g1380 724 Gene3D Ribonuclease Inhibitor 362 722 IPR032675 -
Pvu1g1380 724 SUPERFAMILY L domain-like 348 687 - -
Pvu1g1380 724 Gene3D - 270 359 IPR036388 -
Pvu1g1380 724 Gene3D - 185 269 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1380 Pvu-Chr1 37514744 37517468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1380 43 679 WRKY Transcription Factor Family AT5G45050 23.503 1.19e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1380 - - gmx:100812584 1118.99