Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1375 ATGGCCGAATATTTTGTCTTCGGAATTGCTGAATCACTGCTAGGGAAGCTTGCATCTAATCTTTATGAAGAAGTTTCTCGAGCCTTTGATCTGTATGAGGATGTGCAAGGTCTGAGAGACACCTTGTTAATTGTAAAAGGCATGCTGTTGGATGCTGAGGAGAAGAAGGAGAAGAACCATGGGTTGCGTGAATGGCTCAGGCAGATTCAAAATGTCTGCCTAGATGCGGAAGATGTGTTGGATGGATTTGAGAACCAAAGCCTGAGAAAACAAGTTCTCAAAGCTTCAGGCAGCACCAGGATGAAGGTAGACCACTTCTTTTCTTCATCTAATTCTCTTGTTTTCCGTTTTAGGATGGTTAGGCAAATAAAAAATGTTAGGCGTAGATTGGATAAGATAGCAGCAGATGGGAGCATGTTTGGTCTTGAGAAGATTGATATTGATCACAGCCGTCTGCAAAGGAGAGAAATGACTTATTCTCATGTTGATGCTTCAAGGGTTATAGGAAGGGAGAAGAATAGGGAAGAAATTATGAAGCTTTTGATGCAACCTCACCTTCATGGTGATGGTTATGGAGATCAAAGTGTTTGTGTTATTCCCATAGTAGGTATTGGAGGGTTGGGGAAGACCACACTAGCAAAGTTGGTGTTCAATGATAAGAGAATGGATGATCTTTTCCCGTTGAAGATGTGGGTGTGTATTTCTGATGACTTTGACATAAGACAGATAATTGTTAAAATCATCAACTCTGCTTCTGATCCAACCATTTCTGCTGTTCCTCAAGAAAGCATTAACAATTTAGATATTGAGCAGTTACAAAGTCGTCTTAGACATAAACTTTCTTACCAGAAGTATCTACTAGTCTTGGATGATGTATGGAATGAGGATCGTTCAAAATGGATAGAGTTGAAAGATTTAATTAAAGTTGGTGCAATTGGAAGCAAAATCATAGTGACAACACGGAGTCACTCAATTGCTTCCATGATGGGCACTGTTCCCTCGTATGTTTTAGAAGGTCTTTCTGCGGAGAATTGCTTATCTCTGTTTCTCAAATGGGCATTTAGGGAAGGTGAAGAAAAAGAACACCCAAATCTAGTGGAAATTGGAAAAGAAATAGTGAAAAAGTGCGGAGGGGTGCCACTAGCACTAAAAACATCAGGAA 1162 0.401 MAEYFVFGIAESLLGKLASNLYEEVSRAFDLYEDVQGLRDTLLIVKGMLLDAEEKKEKNHGLREWLRQIQNVCLDAEDVLDGFENQSLRKQVLKASGSTRMKVDHFFSSSNSLVFRFRMVRQIKNVRRRLDKIAADGSMFGLEKIDIDHSRLQRREMTYSHVDASRVIGREKNREEIMKLLMQPHLHGDGYGDQSVCVIPIVGIGGLGKTTLAKLVFNDKRMDDLFPLKMWVCISDDFDIRQIIVKIINSASDPTISAVPQESINNLDIEQLQSRLRHKLSYQKYLLVLDDVWNEDRSKWIELKDLIKVGAIGSKIIVTTRSHSIASMMGTVPSYVLEGLSAENCLSLFLKWAFREGEEKEHPNLVEIGKEIVKKCGGVPLALKTSG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1375 387 Gene3D - 339 387 IPR042197 -
Pvu1g1375 387 PANTHER OS08G0543100 PROTEIN 27 385 - -
Pvu1g1375 387 CDD RX-CC_like 8 134 IPR038005 -
Pvu1g1375 387 Gene3D - 10 124 - -
Pvu1g1375 387 Pfam Rx N-terminal domain 11 100 IPR041118 -
Pvu1g1375 387 Coils Coil 66 86 - -
Pvu1g1375 387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 386 IPR027417 -
Pvu1g1375 387 Gene3D - 149 334 IPR027417 -
Pvu1g1375 387 PRINTS Disease resistance protein signature 198 213 - -
Pvu1g1375 387 PRINTS Disease resistance protein signature 279 293 - -
Pvu1g1375 387 PRINTS Disease resistance protein signature 376 387 - -
Pvu1g1375 387 PANTHER DISEASE RESISTANCE PROTEIN RP 27 385 IPR044974 GO:0006952
Pvu1g1375 387 Pfam NB-ARC domain 193 385 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1375 Pvu-Chr1 37444708 37445869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1375 201 387 WRKY Transcription Factor Family AT5G45050 27.692 1.27e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1375 - - pvu:PHAVU_001G1326001 731.095