Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1363 ATGGCTTCGTCTTCCTCCGATCCCGGAAAGTCCGCGGAGACGTCGGAAGTGGCGGTGGCAACCGATCAGCTCTTACTCTACCGAGGATTGAAGAAAGCGAAGAAGGAAAGAGGTTGCACTGCCAAAGAACGCATCAGCAAAATGCCTCCCTGCGCTGCTGGAAAACGCAGCTCAATTTACCGCGGTGTCACCAGGCATAGGTGGACTGGTCGTTATGAAGCGCATCTCTGGGATAAGAGTACGTGGAATCAGAATCAGAATAAGAAGGGAAAACAAGTTTACTTGGGGGCATATGATGACGAGGAAGCAGCTGCTAGAGCTTATGATCTTGCTGCTCTCAAATACTGGGGTCCAGGGACTCTCATTAACTTTCCAGTGACTGACTATACAAGAGATCTTGAAGAAATGCAGAATGTGTCGAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGACTATCAAAATATCGTGGACTCTCCAGTCGATGGGAATCGTCATATGGCCGCATGTCTGGATCTGATTACTTCAATAGCATGCATTATGGTGCAGGGGATGATTCAGCAGCAGAAAGTGAATATGTCAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGACTCGACATTCTGACTCTGGTACAAGATTATCAGAAGAAAAAAAACTTGGTTCTGCTGGAGATATTTGCAGTGAACTAAAGCAATTGGAACAGAAAGTTCAACCTACAGAACCTTATCAGATGCCACAGTTAGGCAGGCCACACAATGAGAAAAAGCAAAGAAGTTCTTCGGTCTCTGCCTTAAGTATCCTTTCACAATCTGCTGCTTACAAGAGCTTGCAAGAGAAAGCGTCAAAGAGACAGGAAAATAGTATTGATAACGATGAGAATGAAAACAAAAATACAGTCAACAAATTGGATCATGGAAAGGCAGTTGAGAAACCATCAAATCATGATGGAGGCAATGATCGGCTTGACATTGCAATGGGAATGAGTGGGACAATGCCTCTTCAAAGAAATGTCTATCCTTTGACACCATTCTTGTCTCAACCACTTTTGACAGCTTACAATACTGTTGATCCAATGGTAGATCCTGTTCTCTGGACGTCTCTTGTTCCCCCCGTACATCCTGCTGGCCTTTCTCGTACGACTGAGGTTACCAAGACAGAGACCAGTTCATCATACACAATGTTTCAGCCAGAGGAATGA 1254 0.4442 MASSSSDPGKSAETSEVAVATDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWESSYGRMSGSDYFNSMHYGAGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKTRHSDSGTRLSEEKKLGSAGDICSELKQLEQKVQPTEPYQMPQLGRPHNEKKQRSSSVSALSILSQSAAYKSLQEKASKRQENSIDNDENENKNTVNKLDHGKAVEKPSNHDGGNDRLDIAMGMSGTMPLQRNVYPLTPFLSQPLLTAYNTVDPMVDPVLWTSLVPPVHPAGLSRTTEVTKTETSSSYTMFQPEE* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1363 417 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 413 - -
Pvu1g1363 417 MobiDBLite consensus disorder prediction 294 339 - -
Pvu1g1363 417 Pfam AP2 domain 59 117 IPR001471 GO:0003700|GO:0006355
Pvu1g1363 417 Gene3D AP2/ERF domain 59 127 IPR036955 GO:0003700|GO:0006355
Pvu1g1363 417 SUPERFAMILY DNA-binding domain 58 126 IPR016177 GO:0003677
Pvu1g1363 417 ProSiteProfiles AP2/ERF domain profile. 59 125 IPR001471 GO:0003700|GO:0006355
Pvu1g1363 417 MobiDBLite consensus disorder prediction 297 336 - -
Pvu1g1363 417 MobiDBLite consensus disorder prediction 255 280 - -
Pvu1g1363 417 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Pvu1g1363 417 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Pvu1g1363 417 PANTHER BNAA03G19580D PROTEIN 8 413 - -
Pvu1g1363 417 SMART rav1_2 59 131 IPR001471 GO:0003700|GO:0006355
Pvu1g1363 417 Coils Coil 300 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1363 Pvu-Chr1 37223732 37227544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1363 17 401 AP2-EREBP Transcription Factor Family AT2G41710 64.796 1.82e-166 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu1g1363 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1363 K09285 - gmx:100786651 763.066