Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1341 ATGGATCACAGACCGAAATCGAAAGATTCACTCCCTTACTCCACTCTTTTCAATCTCGAGTCTTTGGTGAACTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGGCAGCCAAGGTGGGGGGATTGCAAATCACAGTAATGGGAATGTGCATGGAAGGGAGTTGAGTTTGTTAAAGAAGAGGAGGTGGTCTCTAAACAGTGACAATGAGGATAGGAGCGGTTTTTATGAGACACACATGACAGAAGAGCGATATCGATCAATGTTGGGAGAGCATATTCAGAAATACAAGAGGAGGTATAAGGATACGATGAGTAGTCCTGCCCAAAATCAAGCTTCTGTTCCACCTGTGAAAAGCAGCACAGGGTTGAAGGCTCGAAAGTCGGGGAATGAGCGCAGGGGAGGATTACATGCTGTCGAGACTACATCAGAATGGATGAATGATTCGAGTTCCCAGAAACCAGGAAACTACCGTGATGCAGATTTCACGCCACCATATGGCACCACTGATAGGATTGTGTATGAACCTGCATCTTTGGATATTGGGGATGGAATCATTTACAGGATTCCTCCAATCTATGATAAGTTGGCTGGAGCTCTGAACCTCCCAAGCTTCTCCGATATCCATGTTGAGGATTTTTACTTAAAAGGCACCTTGGATTTGGGTTCATTGGCTGAAATTATGGCTGCTGATAAAAGATTTGGGAATAGAAACCGAGCCGGCATGGGGGAAGCATTACCCCAATTTGAATCACTGCAGGCACGGTTGAAGCTCATGGGAGCTTCAAATTCTGCTCATACGTTCAGTCTGAAAGTGTCTGATGCTGGTTTGAATTCCTCCATTCCAGAGGGTGCAGCAGGAAGCATTAGGCGATCTATTTTGTCCGAGGGTGGTGTATTGCAGGTTTATTATGTGAAAGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAACAAAAAGTGAAAAAGGACCCTGCTTTGATAGAGAAGGAGGAAATAGAACGATGTGGTAAGATTTGGGTAAATATTGTGAGAAGGGACATACCAAAGCATCATAGGAACTTCACTACTTTTCATCGAAAGCAGCTCATTGATGCCAAGAGGGTCTCAGAGACTTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCCCTTAAATTGACAAGGGCAGCCGGAATGCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAAGAGATGACAGAAGTGAGGAAGAGGGAGGAAAAAGAAGCCGCAGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAGGCAAAGAGGCAACAACAAAGGCTCAATTTTCTTATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTATCTTCAGAAACTTTACCCAACGTAGATGAAGATGCAAATGATCAAGATGCAATGGTTGATGACTCTTCAGATGCTAAGCCTGATGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGAGGGAAGCTTTGAAGGCTGCACAAGAAGCAGTTTTTAAGCAGAGAAGTTTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACAGAGTCACTTCCACCAGATGTTGCTGGAGCAAGTAATATTGATTTGCAAACCCCCTCTACCATGCCAGTGGCATCCACGGTTCGGACACCTGAATTATTTAAAGGGGTTCTTAAGGAATATCAGCTAAAGGGTCTTCAGTGGCTTGTAAATTGTTATGAACAGGGTTTAAATGGTATTCTGGCGGATGAAATGGGACTTGGAAAGACAATTCAGGCCATGGCATTCTTGGCCCATTTAGCTGAGGAAAAAAACATATGGGGACCTTTTTTGGTTGTTGCACCCGCTTCAGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCGGAACTGAAAAGACTTCCATATTGGGGCGGACTTTCAGAACGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTACCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTATCAGCTATTAGTATCTGATGAGAAGTATTTTCGTCGTGTGAAATGGCAGTATATGGTCTTAGATGAAGCCCAGGCAATCAAAAGTTCAACAAGTATAAGATGGAAGACACTTCTTAGTTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCCATTCAGAATAACATGGCTGAGTTATGGGCTCTTCTTCACTTCATCATGCCAACTTTATTTGACAGCCACGAGCAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTGGTTTCTGAGCTGACTAGAAAAACTGAGGTTACTGTGCATTGTAAGCTGAGTTCTCGGCAGCAGGCTTTTTATCAAGCAATTAAGAACAAGATCTCTCTTGCTGAATTGTTTGACAGTAACCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGCAGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAATTGGAGGATGTTTATTATTCTGGTGGTCACAACCCCATATCATATGAGATGCCAAAACTTGTCTATGAAGAAATTATACAAAATTCAGAGACTTTCAGATCAGCTGTTGGTGGTGGTGTCTCCAGAGAATCTTTTCACAAACATTTTAGTATTTTTAGACCAGAAAATGTTTTTCGATCTGTATTCTCAGAAGACACTTACAGTAAAAGTGGAAACCTAGGTTTTACCCATTTGATGGATTTGTCTCCCCAAGAGGTGATGTTTCTGGCTACTGCTACTTTTGTGGAGAGACTATTATTTTCTATTACTAGAAGGGAACGTAAATTCATTGATGAAGCTGTAGACTTTCTAACGGAGACCATAGATGATGATCCAGACTGTAGTTACCTTGAGAAAGAAAAAGTTAGAACGGTTACACGAATGTTACTGGTGCCAACGAGATCTGAGGCTCAGTTTCTGCAGGAAAAATTGCAAACTGGGCCCAGCCATGCTCCTTTTGAGGCCTTGATTGTCCCACATGAAGATAGGCTGTTATCAAACGCTAGGCTTGTTCACTCTGCTTACACATATATCCCACAAAGTAGAGCTCCCCCAATTGGTCTTCACTGCTCAAATAGAAACTTCTACTATAAAATGATTGAAGAATTACATGATCCCTTGGTTAAGAGGTTGTTTCTGGGATTTGCGCGTACATCTGATTACAATGGGCCTAGAAAGCCAGATGCTCCTCACCATTTAATTCAAGAGATAGATTCTGAACTACCTGTTTCTCACCCTGCTCTTCAGTTAACACACAGCATTTTTGGAACTTGTCCACCAATGCGTAATTTTGACCCTTCAAAATTGCTCACTGACTCTGGAAAGCTCCAAACACTTGATATATTACTAAAACGCTTAAGAGCAGGAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAAATGTTGAATATTTTGGAGGACTACATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGATCATCCACTATCCAGGATCGTAGAGACATGGTCAGAGACTTTCAGCATAGGAATGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGGTTAGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACCTTGGATCTTCAGGCAATGGACCGAGCTCATCGTTTGGGCCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCGAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGATCTGTCGGTGGTGATCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTCTAGATGATGCTCAGTTGGAGCAGAAATTAAAGGAGATCCCTATCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAGAGGCATTAGGGTAAATGAAGATGGTGATGCATCACTAGAAGATCTAACAAACTCTGCAGCTCAGGGTACTTCAGATTTTGATCCTGCCGTGGATCCGGAGGGTTCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCGTCGGATAAACACAAGCCAAAGAATTCTCAAAAGATGAGTGAATTTAGTACTGCACCCATGGACAGCGAATTGGAGGATGTCGATCCAGTGGGTCAGAAGCCCAAGAGACCGAAGAGGGTAAAGAAGAATGTGAACGTTGAAGATGCTTTTACTGGGACTGCTACCATTGTCCCAGAGCAGAACCAATTTCCACCTCCACGTGATTTTAATGCCGGAAGTTCTAAAGCAGAATCCGGCCAAGACAACTGA 4587 0.4214 MDHRPKSKDSLPYSTLFNLESLVNFQLPQQDDDFDYYGNSSQDESRGSQGGGIANHSNGNVHGRELSLLKKRRWSLNSDNEDRSGFYETHMTEERYRSMLGEHIQKYKRRYKDTMSSPAQNQASVPPVKSSTGLKARKSGNERRGGLHAVETTSEWMNDSSSQKPGNYRDADFTPPYGTTDRIVYEPASLDIGDGIIYRIPPIYDKLAGALNLPSFSDIHVEDFYLKGTLDLGSLAEIMAADKRFGNRNRAGMGEALPQFESLQARLKLMGASNSAHTFSLKVSDAGLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEIERCGKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRVSETCQREVRMKVSRSLKLTRAAGMRTRKLARDMLLFWKRIDKEMTEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPNVDEDANDQDAMVDDSSDAKPDEEEDPEEAELKREALKAAQEAVFKQRSLTSAFDTECLRLRQAGETESLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFAEIPNSLPPPPFGELEDVYYSGGHNPISYEMPKLVYEEIIQNSETFRSAVGGGVSRESFHKHFSIFRPENVFRSVFSEDTYSKSGNLGFTHLMDLSPQEVMFLATATFVERLLFSITRRERKFIDEAVDFLTETIDDDPDCSYLEKEKVRTVTRMLLVPTRSEAQFLQEKLQTGPSHAPFEALIVPHEDRLLSNARLVHSAYTYIPQSRAPPIGLHCSNRNFYYKMIEELHDPLVKRLFLGFARTSDYNGPRKPDAPHHLIQEIDSELPVSHPALQLTHSIFGTCPPMRNFDPSKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDAQLEQKLKEIPIQVKDKQKKKQPMRGIRVNEDGDASLEDLTNSAAQGTSDFDPAVDPEGSKSSNKKRKAASDKHKPKNSQKMSEFSTAPMDSELEDVDPVGQKPKRPKRVKKNVNVEDAFTGTATIVPEQNQFPPPRDFNAGSSKAESGQDN* 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1341 1528 SMART helicmild6 1236 1319 IPR001650 -
Pvu1g1341 1528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 775 IPR014001 -
Pvu1g1341 1528 MobiDBLite consensus disorder prediction 114 129 - -
Pvu1g1341 1528 Gene3D - 588 829 IPR038718 -
Pvu1g1341 1528 Pfam Helicase conserved C-terminal domain 1210 1319 IPR001650 -
Pvu1g1341 1528 MobiDBLite consensus disorder prediction 491 518 - -
Pvu1g1341 1528 Pfam DNA-binding domain 352 480 IPR020838 GO:0003677
Pvu1g1341 1528 PANTHER HELICASE SRCAP-RELATED 16 1487 - -
Pvu1g1341 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 822 1388 IPR027417 -
Pvu1g1341 1528 Coils Coil 428 467 - -
Pvu1g1341 1528 SMART ultradead3 588 783 IPR014001 -
Pvu1g1341 1528 MobiDBLite consensus disorder prediction 486 518 - -
Pvu1g1341 1528 MobiDBLite consensus disorder prediction 154 173 - -
Pvu1g1341 1528 MobiDBLite consensus disorder prediction 154 168 - -
Pvu1g1341 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 820 IPR027417 -
Pvu1g1341 1528 MobiDBLite consensus disorder prediction 1390 1411 - -
Pvu1g1341 1528 Gene3D - 830 899 IPR027417 -
Pvu1g1341 1528 MobiDBLite consensus disorder prediction 113 147 - -
Pvu1g1341 1528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1210 1360 IPR001650 -
Pvu1g1341 1528 CDD SF2_C_SNF 1198 1330 - -
Pvu1g1341 1528 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Pvu1g1341 1528 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 1487 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Pvu1g1341 1528 MobiDBLite consensus disorder prediction 1390 1528 - -
Pvu1g1341 1528 Pfam SNF2-related domain 607 894 IPR000330 GO:0005524|GO:0140658
Pvu1g1341 1528 MobiDBLite consensus disorder prediction 33 61 - -
Pvu1g1341 1528 Gene3D - 1175 1425 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1341 Pvu-Chr1 36685741 36696715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1341 613 902 RAD5 or RAD16-like Gene Family AT5G43530 28.869 8.39e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu1g1341 SNF2_N 7.3e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1341 K11665 - gmx:100780615 2706.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1341 1 36685741 36696715 Pvu1g1341 1 36685741 36696715 ECH