Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1331 ATGGCATCGGTGCGCGATGCTCCGGCATGGAAGTTCCACGTGTTTCTGAGCTTCAGAGGAGAGGACACGCGGAACGGTTTTACGGACCACCTCTACGCTGCGTTTAGGGGACGCGGCTTTGCCGTTTTCAGAGACAACGAAGAGCTTGAGAGAGGAGAAGTCATCGCGCACGCGCTTCTGAAGGCGATCGATGAGTCTCTGTGTTCCGTGGTGGTTCTCTCGCCGCGCTACGCCTCTTCGCGGTGGTGCTTGGACGAGCTTCTCAGGATTCTGGAATCGCGAGCGAAGTTCGGTCGCAACGTTCTGCCGATCTTTTACGACGTGGATCCCTCAGACGTAAGGTATCAACGAGGAACTTTCTCCGAAGCTTTTGCGAAGCATGCGGAGAGGTATGGAAGCAATGAGATTCGGATGTGGAGACAAGCGTTGAAGGTCGTTGCGGATTTGGCTGGCTGGACCTCTAAAGACAAGCGTGAAACAGAACTCATTGAAGAAATTGTTGCAGAGGTGTGGGAAAAGTTACAACCTAAATTGCCATCCTATGATGATGAACTGGTTGGAATTGATTCTAGGATAAAAAGGATTTATGCACTTTTAAGAACAGAATCAGAGGAAGTTCGCTTTATGAGGATATGGGGCATGGGTGGTATTGGAAAGACAACATTAGCCAAGTTTGTCTATAATAAAATCCATGACCAATATGATATTAGTTGCTTTCTTGAGAATGTTAGAGAGGTTTCGAGTGAAAGAGATGGTCTGCTTTGCTTACAAAGAAAATTGCTTTCCCATTTAAAAATAAGAAGCATGAGAATTGAAAGTTTGGACCAAGGAAAGGAAACATTACGGAGTCTTTTATTCAATAAGAAAGTTCTCCTTGTCCTTGATGATTTAAGTTCTGATATCCAAGTAGAGAATTTAGCTGGGAAGCCAGAATGGTTTGGTCAAGGGAGTAGAGTAATTATAACAACTAGAGATAAGCATCTACTTAAATCATTTCATGTGTGTGAGAATTATGATGTTCAGATCTTAAATGAGGATGAATCCCTTCAACTCCTTTGCCAAAAAGCGTTTAGAGGAGAAAAGCCTGAAGAAGCTTACTTAGAGTTGTCTAGTTCTGTGGTTCAATATGCTGGAGGTGTTCCTTTGGCCCTCAAAGTGTTGGGTTCATTTCTCAGTGGAAGAAGTGCTTCCGTATGGGAAGACGCTTTGAAAATGTTAAGGAAGGATGTTCAAAATGATATTTGTAAGACTTTAAGAATAAGTTATGATGGATTACGAGATAACGAGAAGGCTATACTTCTAGATATTGCTTGTTTTTTCAAAGGAAACACCAAAGATGATGTAACACGAATATTGGAAAATTGTGATTTCAATCCACTGATTGAAATGTGTAGGAATATTGTTCTCCAAGAATCTCCTAATGATGCCAGCAAGAGAAGTAGGTTGTGGTCACTCAAGGACATTGATCAAGTATTGAGAAATAATAAGGGAACTGAATCCATTCAAGCTGTAGTTTTAAATCTGCCTGAGCCTTATGAAGCATGTTGGAATCCGGACGCTTTCTCAAAGATGAGTAATCTTAGATTGCTCATGATATTGAATAAATTGCAACTTCCGCTTGGCCTCAAATGTCTTCCCAGTGGATTAAAAGTTCTTGTATGGAAGCAATATCCTCTTGAATCACTGCCAGTTGGAGCCCAACTGGATGAACTCGTTGAACTTGATATGTGTCGTAGCCAAATAAAACACCTTTGGGGAGGAACAAAGTTTCTGGAAAATTTGAAGATCATCAATTTGAGAAATTGCAATAATCTACTCAGAACTCCAGATTTCACTGGAATTCCAAATCTTGAAAAATTGGATCTTGAAGACTGTGAAAACCTAGTTGAGGTTCATGCATCTCTTGGACTTCTTAAAAAGCTTTCGTACGTGACATTTGAAGATTGCAAAAATCTCAAAATCCTTCCAAGAAAGTTGTTAATGGATTCGTTAAAACGTCTAGTTCTTTCAGGCTGCTCCGCAGTTAGAAAGCTTCCTGAGTTTGGAGAAAGTATGAAAAGTCTATCCGTGCTTGCTTTAGAGGAGACTTCCATAGCTGAACTACCCGTGTCTGTTGGTCACTTGACAGGTCTTACTAATTTGCTTTTAGAGGATTGCAAAAATATTGTTCTTCTACCAAATACATTTTCTAATTTGAAATCTCTCAGAAGGCTCAATATCTCTGGTTGTTCAAAAATTTCTAAACTGCCTGATAATTTGAATGAAAATGAGGCTTTGGAATCTTTAAATGCAAGCGAGACTGCTATTAGGGAAGTGCCGTCATCCATTGTTCTTTTAAAAAATCTCAGACTGCTTTTATTTCGTGGATGCAAAGGCCTAACATCAAACTCATGGAGCTCACTTCTCCCTTTTGAGAAGATTCTCAGGTTTAGTAGTCATCCAACTCCAAAGAGATTGATCTTGCCTACTTTTTCTGGTCTATCCTCATTGAAGAAACTGGACTTTAGTTATTGCGATCTCCGTGATGGATCAATTCCTGAAGATCTTGGCTGCTTGTCATCATTGGTAACATTAGATCTAAGTGGGAACAATTTTGTACGCTTACCTGGTTGCATCTCTGAACTTTTGAAGCTAAAAAAACTATTATTGAAGTGCTGCCCAAGCTTGGAGTCATTTCCTAAGCTGCCACCAGAAGTACATTATGTAAATGCAAGTGATTGTGGTTCAATGAAACCGTTATCAGATCCGCAACAGATATGGGGTCATTTGGCATCATTTGCCTTTGACAAGTTGCAAGATGTCAATCAGTTTAAAACCTTATTGGTAAGTCCAGGAAACGAAATTCCATCATCTTTTTTCTATCAAAAGCATCTCAACCAAGTCCAAGACATAGAATACTTGAAAGAAAACTACATTTGGGCTGACTCCACTGTGTCAATATCGATGGACTTAGCTCAACTTCGTCACCGGTATCATAGAAGTGAATGGTGGGGACTTTTGGTTTGCCTAGTTGTAGAAGATGTGGAGCCTTCACCTTCACAGGAATATCGCATTGGTTGGACTTCAAAAGTTCCTAGATTCGAAAATATTGTGCAGCAGCTGTGCCACAAGATGGAGCAGGGGCCCATCACTGGAATCCCAAATCATAAATATCCTCACCTGTTGATTTTATATATTCCGTTCTATTCGGCTCGCTGGTTTTATGTTCATGACAAGCTTCAATTAATATTTTATTGTTCTAGCCTCAAGAGCAGATTAGTGATAAAGAAATGTGGATGGCGAATATTATGTAAGGAAAATGCTGAAAACTGGCGCAGCAAACTGTCTGAATGCAACACTAATTCCTCCGATCAACGTGTTTCAAATCCAAGGGGCGGTTGCTTATCTCCGCACTTTTCATCTTGGAGATGGATATCTCGTCTCAAGGTTCCCCAACACTGCAAAACTTTCCTCTTGGCTATCCTCTGTGATCGCTTGCCCGCTAATGAAAGGTGCACATTCTGCTGCTTGGAAGGGACTGCCATCCATGTTTTACGAGACTGTTCAAGAGCTACTGCAATCTGGGTTCAAATGGTTCCTCCAGAGGTGTGTGATCAGTTTTTTTCAACATCTCTTCATGACTGGATGCACAGGTTCCTTCAGAAGCCCTGGTTTCCCAACAGGGACTATTATGTTGACTGTTTGAGGTTTACTGTTACAACTTGGCTGCTTTGGAAGGATAGAAATAGTTCCATCTTCAAGCGAAATTCTCCAACAGATAATGATGGGTTGTATTCTCTGATTCAGTCTCTGGTAAAAGAATATGCAATGCTTTTGCATCTAAAAGGGGAAGAGGGTACTTCTTCTGCGAATTCTCTTTCCCAGAACTCTCGTCTAAAACTTTTTATCAAGCTGAACGTGGATGGCTGTTGCAATGACAATCCTGGAAATGCTGGTTATGGGGGTCTCTTTCGTGACGTAGAGGGGAAGTGGCTTGGTGGGTTCTATGGATCTCTTGGCCTTGCAACGAATGTGAAAGCTGACCTTTTTGCCATTTGTCAGGGTTTGATCACAGCTTGGGATTTGGGTTACAGAACCGTGCTGGTTGAAACTGATTCATTAGAAGCAATAAATCTGATTAAGGAGGCCAACATTGAGGATTGTGCCTATGGTGACTTGCTTGCTGACATACGCTCCCTCATGCAAAGAAATTGGTCCTTGGACTTGATCCATTCTCTTAGACAAGATAATGCATGTGCAGACATTTTATCAAAGCTTGGAGCTGAGCAGCATGAGGTCTATTGCTTCCTGGCTCATCCACCGCAGCAGCTTCAGCTGGCATTGCTGGCTGATGCCCTGCAAGTTCAAATTCCTTGCCTGTAG 4362 0.4149 MASVRDAPAWKFHVFLSFRGEDTRNGFTDHLYAAFRGRGFAVFRDNEELERGEVIAHALLKAIDESLCSVVVLSPRYASSRWCLDELLRILESRAKFGRNVLPIFYDVDPSDVRYQRGTFSEAFAKHAERYGSNEIRMWRQALKVVADLAGWTSKDKRETELIEEIVAEVWEKLQPKLPSYDDELVGIDSRIKRIYALLRTESEEVRFMRIWGMGGIGKTTLAKFVYNKIHDQYDISCFLENVREVSSERDGLLCLQRKLLSHLKIRSMRIESLDQGKETLRSLLFNKKVLLVLDDLSSDIQVENLAGKPEWFGQGSRVIITTRDKHLLKSFHVCENYDVQILNEDESLQLLCQKAFRGEKPEEAYLELSSSVVQYAGGVPLALKVLGSFLSGRSASVWEDALKMLRKDVQNDICKTLRISYDGLRDNEKAILLDIACFFKGNTKDDVTRILENCDFNPLIEMCRNIVLQESPNDASKRSRLWSLKDIDQVLRNNKGTESIQAVVLNLPEPYEACWNPDAFSKMSNLRLLMILNKLQLPLGLKCLPSGLKVLVWKQYPLESLPVGAQLDELVELDMCRSQIKHLWGGTKFLENLKIINLRNCNNLLRTPDFTGIPNLEKLDLEDCENLVEVHASLGLLKKLSYVTFEDCKNLKILPRKLLMDSLKRLVLSGCSAVRKLPEFGESMKSLSVLALEETSIAELPVSVGHLTGLTNLLLEDCKNIVLLPNTFSNLKSLRRLNISGCSKISKLPDNLNENEALESLNASETAIREVPSSIVLLKNLRLLLFRGCKGLTSNSWSSLLPFEKILRFSSHPTPKRLILPTFSGLSSLKKLDFSYCDLRDGSIPEDLGCLSSLVTLDLSGNNFVRLPGCISELLKLKKLLLKCCPSLESFPKLPPEVHYVNASDCGSMKPLSDPQQIWGHLASFAFDKLQDVNQFKTLLVSPGNEIPSSFFYQKHLNQVQDIEYLKENYIWADSTVSISMDLAQLRHRYHRSEWWGLLVCLVVEDVEPSPSQEYRIGWTSKVPRFENIVQQLCHKMEQGPITGIPNHKYPHLLILYIPFYSARWFYVHDKLQLIFYCSSLKSRLVIKKCGWRILCKENAENWRSKLSECNTNSSDQRVSNPRGGCLSPHFSSWRWISRLKVPQHCKTFLLAILCDRLPANERCTFCCLEGTAIHVLRDCSRATAIWVQMVPPEVCDQFFSTSLHDWMHRFLQKPWFPNRDYYVDCLRFTVTTWLLWKDRNSSIFKRNSPTDNDGLYSLIQSLVKEYAMLLHLKGEEGTSSANSLSQNSRLKLFIKLNVDGCCNDNPGNAGYGGLFRDVEGKWLGGFYGSLGLATNVKADLFAICQGLITAWDLGYRTVLVETDSLEAINLIKEANIEDCAYGDLLADIRSLMQRNWSLDLIHSLRQDNACADILSKLGAEQHEVYCFLAHPPQQLQLALLADALQVQIPCL* 1454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1331 1453 CDD RNase_H_like 1298 1418 IPR044730 -
Pvu1g1331 1453 ProSiteProfiles RNase H type-1 domain profile. 1292 1422 IPR002156 GO:0003676|GO:0004523
Pvu1g1331 1453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 436 IPR027417 -
Pvu1g1331 1453 Pfam Reverse transcriptase-like 1299 1418 IPR002156 GO:0003676|GO:0004523
Pvu1g1331 1453 Gene3D Ribonuclease Inhibitor 683 952 IPR032675 -
Pvu1g1331 1453 Gene3D Ribonuclease Inhibitor 480 681 IPR032675 -
Pvu1g1331 1453 Pfam NB-ARC domain 194 414 IPR002182 GO:0043531
Pvu1g1331 1453 SUPERFAMILY L domain-like 506 803 - -
Pvu1g1331 1453 Gene3D - 342 426 IPR042197 -
Pvu1g1331 1453 Gene3D - 1295 1423 IPR036397 GO:0003676
Pvu1g1331 1453 ProSiteProfiles TIR domain profile. 10 174 IPR000157 GO:0007165
Pvu1g1331 1453 PRINTS Disease resistance protein signature 208 223 - -
Pvu1g1331 1453 PRINTS Disease resistance protein signature 284 298 - -
Pvu1g1331 1453 PRINTS Disease resistance protein signature 377 391 - -
Pvu1g1331 1453 PRINTS Disease resistance protein signature 730 746 - -
Pvu1g1331 1453 PANTHER - 462 911 - -
Pvu1g1331 1453 PANTHER - 14 460 - -
Pvu1g1331 1453 SUPERFAMILY Ribonuclease H-like 1296 1424 IPR012337 -
Pvu1g1331 1453 SUPERFAMILY L domain-like 748 895 - -
Pvu1g1331 1453 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 152 IPR035897 -
Pvu1g1331 1453 Gene3D - 6 175 IPR035897 -
Pvu1g1331 1453 Pfam TIR domain 11 186 IPR000157 GO:0007165
Pvu1g1331 1453 SMART till_3 11 149 IPR000157 GO:0007165
Pvu1g1331 1453 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 462 911 IPR044974 GO:0006952
Pvu1g1331 1453 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 460 IPR044974 GO:0006952
Pvu1g1331 1453 SMART LRR_typ_2 852 875 IPR003591 -
Pvu1g1331 1453 SMART LRR_typ_2 732 756 IPR003591 -
Pvu1g1331 1453 SMART LRR_typ_2 685 708 IPR003591 -
Pvu1g1331 1453 Gene3D - 176 339 IPR027417 -
Pvu1g1331 1453 SUPERFAMILY "Winged helix" DNA-binding domain 413 492 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1331 Pvu-Chr1 36174911 36182090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1331 19 787 WRKY Transcription Factor Family AT4G12020 32.801 3.23e-96 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1331 - - var:108321227 2561.18