Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1330 ATGGCGCCAAAACGAAAACCTTCTTCTCCAATCTCCATCGGTAACTGCGAGGTTGCTGTCGAAGCCACTCGTTTCACCTGTACCTCCGATTCAAACGCCGTCGTAATTTCGCTTCCCCGAAGCGGAAAGATCAAAGTGTCAGTTGTTGAAAACCACGAGAACGCTTCTGAGGATTTTAGAATTGGTCATAAAGAGCATGAGTTCGTGCTGGTTAATCCTAAAGATGCTGATTCTGTTACTAAAGCCTACCTTCAGGAAGTATTACAAATGTACAAGACGGAGCTACCTGGAATGAATTATGCTGCAAATACCGGAAAACAATCCAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGAACCCTACTGGTAAAATCCACTTGTGTTGGAAATTCAGGAAAGGTTATAGCAGCAATTACATACCAAATCATCCCTGCAGATACAGAATATGCCGAGGTCCCACTTGCAGCTGTCACTGCAATCCATCAACGAAAGGGTTTTGGTCATTTATTGGTTCTAGAGCTACGAAAAAGACTTCAAAGTGTTGGCATTCGTTCTATTTTATGCTGGGGAGACAAAGAATCAGAAGGATTTTGGCTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGGTACCAAAGGAAGGGCCCGCAGGTTACCTGTGAAAGCTGATATTCAGAAATCATTATGCTTTCTTGGTGGTTCAACTCTCATGGTTTGCCACGTAATGAAAGAATTCTTAGCCGATGATGCTAACACTACGAACTGTCTCCCTTCACAGTTTCATCAGAATTCCTCTACACCTGCCATTGCTGAAGGATTTGACAGTCATAATCCTAAGCAATGTTGTGGTAGTATTGCTCCTTTTGCCCGAATAAATGATGATATACAGGCCACTGGTGCAGAAAGTTTACAGGATGGAAATGATGCTAATGTGAATTATTGTTCTCAATCTACAAAAGGTGCAAAGAGGACCTGGGAAGCCTCTTTATCCTCATTGAAGTCAAAAAGAGTGAAGGGGAGCCAGCTGGTTGACAATCAATCAGGTTCTAGCTGCGGTTTTATCTTAGAGACTGATGAGGCCAATCCCTGTTTTGTAGAAGTCCTTCATGATCCTTTGATTACAAAAGGTTCTGGAAAATGTATCGAGAATAATTTACATTTAGAAGCTCCTATCAACATAGAACCGCCGTCTACTAAACAAAGCTTTAGAATTATGTTGATGAATATTGCTGATGATGCTAAGAAAACACAGCTTACAAAGGTGATTGAAGACCTTGGTGGAACTATATCCACTTGTGGAAGTATGACCACACACGTTGTCACAGGAAAAGTGAGAAAAACTCTGAATTTCTGTACTGCGCTTTGTTCAGGTGCTTGGGTGATCTCATCAAGTTGGTTAAAAGAAAGTTTTCGTGAAGGCAAATTTGTTGATGAACTGCCTCACATACTGAACGATCCGGATTATCCGCTGAAGTACAAATATGATTTAAAAAGTGCAGTTTTACGGGCAAAAGCTAGCCCTCGCACTTTGTTCAAGGGTTATAACATATGTATTGCAGCTCATGTTCAAACTCCCGCTAAAATATTGTCTGCAATTGTCATGTCCGCAGGTGGTAATGTAATTAGTAGAGTGGAGAAAGTAAACGAAACATCAACAACAATCTTTGTGACGAGCGAAGAAGACACGGAAGAAGCAATGGAAGCTGCAAAGAAAGGGATCCGGACTTTTAGTTGTGATTGGTTTATGAACTGTGTGATGAGACAAGAACTTGACTTGGACGCCCCCCAGTTTGCTGAGTCCTTATAA 1812 0.4139 MAPKRKPSSPISIGNCEVAVEATRFTCTSDSNAVVISLPRSGKIKVSVVENHENASEDFRIGHKEHEFVLVNPKDADSVTKAYLQEVLQMYKTELPGMNYAANTGKQSKFLERCVTNGKYRTLLVKSTCVGNSGKVIAAITYQIIPADTEYAEVPLAAVTAIHQRKGFGHLLVLELRKRLQSVGIRSILCWGDKESEGFWLKQGFVEIAQVGTKGRARRLPVKADIQKSLCFLGGSTLMVCHVMKEFLADDANTTNCLPSQFHQNSSTPAIAEGFDSHNPKQCCGSIAPFARINDDIQATGAESLQDGNDANVNYCSQSTKGAKRTWEASLSSLKSKRVKGSQLVDNQSGSSCGFILETDEANPCFVEVLHDPLITKGSGKCIENNLHLEAPINIEPPSTKQSFRIMLMNIADDAKKTQLTKVIEDLGGTISTCGSMTTHVVTGKVRKTLNFCTALCSGAWVISSSWLKESFREGKFVDELPHILNDPDYPLKYKYDLKSAVLRAKASPRTLFKGYNICIAAHVQTPAKILSAIVMSAGGNVISRVEKVNETSTTIFVTSEEDTEEAMEAAKKGIRTFSCDWFMNCVMRQELDLDAPQFAESL* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1330 603 PANTHER N-ACETYLTRANSFERASE 4 268 - -
Pvu1g1330 603 PANTHER N-ACETYLTRANSFERASE 273 603 - -
Pvu1g1330 603 CDD NAT_SF 132 191 - -
Pvu1g1330 603 SUPERFAMILY BRCT domain 404 489 IPR036420 -
Pvu1g1330 603 Pfam Acetyltransferase (GNAT) family 131 205 IPR000182 GO:0016407
Pvu1g1330 603 Gene3D BRCT domain 395 509 IPR036420 -
Pvu1g1330 603 ProSiteProfiles BRCT domain profile. 396 485 IPR001357 -
Pvu1g1330 603 ProSiteProfiles BRCT domain profile. 508 592 IPR001357 -
Pvu1g1330 603 Pfam BRCA1 C Terminus (BRCT) domain 410 472 IPR001357 -
Pvu1g1330 603 Pfam BRCA1 C Terminus (BRCT) domain 509 587 IPR001357 -
Pvu1g1330 603 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 273 603 - -
Pvu1g1330 603 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 4 268 - -
Pvu1g1330 603 CDD BRCT_PAXIP1_rpt6_like 512 593 - -
Pvu1g1330 603 SUPERFAMILY BRCT domain 499 592 IPR036420 -
Pvu1g1330 603 Gene3D BRCT domain 510 602 IPR036420 -
Pvu1g1330 603 SMART BRCT_7 510 590 IPR001357 -
Pvu1g1330 603 SMART BRCT_7 398 475 IPR001357 -
Pvu1g1330 603 Gene3D - 64 219 - -
Pvu1g1330 603 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 69 210 IPR016181 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Pvu1g1330 BRCT 2.6e-05 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1330 - - var:108321219 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1330 1 36136617 36143190 Pvu1g1330 1 36136617 36143190 ECH