Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1313 ATGGTCGCATTGTTCTCTCCTCCTGTCTTCTCAGCCAAGGGGTGGCTCTTAGAGGAGGAGCCATTAGGCTATAATATTACCCAAAACCGCTTCTACCAAGATGATGTGTCATCGGAGTACTCCTTTCCCTATCAATTTTATCCATCGCAGCCGCAGATTGAGGTTGAATTACAAAGGTCCACTGCACCATCCCCTGATCCTGCCATGGTCAAGAAACTTAGCCACAATGCTAGTGAACGTGATCGCCGCAAGAAGGTCAACAACTTGGTTTCTTCACTTCGCTCTCTTCTTCCACTTGCAGATCAAACGAAAAAAATGAGCATTCCTTCAACAGTTTCTAGAGTGTTGAAATACATTCCTGAACTACAACAGCAAGTGCAAGCACTAACAAAGAGAAAAGAGGAGCTTCTATGCAGAATTTCTCGGCAATTGCAAGGAGATGCAGTGAAGAAAGAATCTCATAGGAAAATTTCCCATCACAACTCTTCTTTTGTTGTCTCTACAACTAGGCTTAACGATTGTGAAGCTGTAGTTCACATTTCCTCTCAAGAGACCCACAAGGCTCCACTATCCGAGATCTTGCAGTGTTTAGAAAATGATGGCCTTTTTCTGCTAGATGCTTCTTCCTCACAAACCTTTGGAGGAAGGTTCTTCTACAACTTGCATTTTCAGGTGGCAAAAGCAGATAGATTAGAGTCCGATATTCTGACTGAGAAGCTTTTACCAATATATGAGAAGCAAAGGATTTTTCAATGA 756 0.4259 MVALFSPPVFSAKGWLLEEEPLGYNITQNRFYQDDVSSEYSFPYQFYPSQPQIEVELQRSTAPSPDPAMVKKLSHNASERDRRKKVNNLVSSLRSLLPLADQTKKMSIPSTVSRVLKYIPELQQQVQALTKRKEELLCRISRQLQGDAVKKESHRKISHHNSSFVVSTTRLNDCEAVVHISSQETHKAPLSEILQCLENDGLFLLDASSSQTFGGRFFYNLHFQVAKADRLESDILTEKLLPIYEKQRIFQ* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1313 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 141 IPR036638 GO:0046983
Pvu1g1313 251 Gene3D - 66 160 IPR036638 GO:0046983
Pvu1g1313 251 CDD bHLH_AtORG2_like 71 144 - -
Pvu1g1313 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 122 IPR011598 GO:0046983
Pvu1g1313 251 SMART finulus 76 128 IPR011598 GO:0046983
Pvu1g1313 251 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 246 - -
Pvu1g1313 251 MobiDBLite consensus disorder prediction 60 83 - -
Pvu1g1313 251 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 246 IPR015660 GO:0003700|GO:0006357
Pvu1g1313 251 Coils Coil 119 139 - -
Pvu1g1313 251 Pfam Helix-loop-helix DNA-binding domain 71 123 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1313 1 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.732 2.89e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g1313 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1313 - - vra:106752555 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1313 1 35518285 35520566 Pvu1g1313 1 35518285 35520566 ECH