Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1289 ATGTCCCTTGAAGACTCTCTAAGATCTCTCTCCCTCGATTACCTCAACCTCCTTATCAACGGCCAGGCCTTCAGCGACGTCACTTTCAGCGTTGAGGGTCGCCTAGTCCACGCGCACCGCTGCATACTCGCCGCCCGCAGCCTCTTCTTCCGAAAATTCTTCTGCGGCCCGGACCCTCCCTCCGGTCTCGACCCCGCCGGTCCGCGGCTGAACTCGCGCTCCGGCGTCATCCCAGTCAACTCCGTCGGCTACGAGGTCTTCCTTCTGATGCTCCAGTTCCTGTACAGTGGGCAAGTCTCCATCGTCCCTCAGAAGCACGAGGCCCGCCCCAATTGCGGCGAACGAGGGTGCTGGCACACGCATTGCACCTCCGCCGTCGATCTCGCCCTTGACACCCTCGCCGCCGCCAGATACTTCGGCGTGGAACAGCTTGCATTGCTTACCCAGAAACAACTTGCGAGCATGGTGGAGAAGGCTTCCATAGAGGATGTAATGAAAGTGCTGTTGGCTTCCAGAAAGCAAGACATGCAGCAACTATGGGCCACTTGTTCTCACTTAGTAGCCAAATCAGGTCTTCCTCCCGAGGTTCTAGCCAAGCACCTCCCTATAGACATTGTGGCTAAGATCGAAGAGCTACGTATCAAATCGTCTATGGCGCGCCGCTCCTTGGTGCCGCACCACCACCACCATCATCCCCACCATCACCACGCCGCTCTCGATCTCGAGGACCAGAAAATCCGGCGAATGAGGCGCGCCCTGGACTCCTCCGATGTCGAACTCGTAAAGCTCATGGTAATGGGAGAGGGTCTCAACCTCGACGAAGCGCTGGCCTTACCCTACGCGGTGGAGAACTGCAGCAGAGAGGTGGTGAAGGCATTGCTGGAACTCGGTGCAGCCGATGTCAACTACCCCTCCGGCCCCGCCGGAAAGACGCCGCTCCACATTGCGGCGGAGATGGTGTCGCCGGACATGGTGGCGGTGCTGCTGGACCACCACGCGGACCCGAATGTGAGAACCGTTGATGGGGTCACGCCTTTGGACATCCTCAGAACCCTAACCTCGGATTTCCTCTTTAAGGGTGCTGTCCCAGGATTGACCCACATCGAACCCAACAAACTAAGGCTGTGTTTGGAGCTTGTTCAATCCGCAGCTCTTGTCATGTCACGAGAAGAAGGCAATGCCAACAACAACAACGCTCCTTCTAACTCCGCAGCACCCATTTACCCTCCCCCCATGAACGAGGACCATAACAGCAGTAGTAGCAGCGGCAACAACAACAACAACATTGGAAATCTGAATTTGGATTCAAGGTTGGTGTATCTGAATCTTGGTGCGACAGCTTCCATGAGTTCCCGGTTGGACGGTGGTGAGGACGAGAGAGAAGCCATGAACACAACCATGTACCACCACCACTCTCATGACTTCTAG 1428 0.5658 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPAGPRLNSRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRIKSSMARRSLVPHHHHHHPHHHHAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANNNNAPSNSAAPIYPPPMNEDHNSSSSSGNNNNNIGNLNLDSRLVYLNLGATASMSSRLDGGEDEREAMNTTMYHHHSHDF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1289 475 SMART ANK_2a 308 337 IPR002110 GO:0005515
Pvu1g1289 475 SMART ANK_2a 273 303 IPR002110 GO:0005515
Pvu1g1289 475 MobiDBLite consensus disorder prediction 392 429 - -
Pvu1g1289 475 SUPERFAMILY Ankyrin repeat 267 351 IPR036770 -
Pvu1g1289 475 Gene3D - 235 356 IPR036770 -
Pvu1g1289 475 MobiDBLite consensus disorder prediction 413 429 - -
Pvu1g1289 475 CDD BTB_POZ_NPR_plant 8 156 - -
Pvu1g1289 475 SUPERFAMILY POZ domain 8 154 IPR011333 -
Pvu1g1289 475 SMART BTB_4 25 156 IPR000210 GO:0005515
Pvu1g1289 475 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
Pvu1g1289 475 Pfam BTB/POZ domain 16 105 IPR000210 GO:0005515
Pvu1g1289 475 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 472 IPR044284 GO:0099402
Pvu1g1289 475 Pfam Domain of unknown function (DUF3420) 191 250 IPR024228 -
Pvu1g1289 475 Gene3D Potassium Channel Kv1.1; Chain A 4 189 IPR011333 -
Pvu1g1289 475 ProSiteProfiles Ankyrin repeat region circular profile. 308 338 - -
Pvu1g1289 475 Pfam Ankyrin repeats (3 copies) 256 338 IPR002110 GO:0005515
Pvu1g1289 475 ProSiteProfiles BTB domain profile. 25 103 IPR000210 GO:0005515
Pvu1g1289 475 PANTHER REGULATORY PROTEIN NPR5 1 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1289 Pvu-Chr1 34956932 34960420 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pvu1g1289 Ank_2 5.6e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1289 K14508 - gmx:100816086 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1289 1 34956932 34960420 Pvu1g1289 1 34956932 34960420 ECH
Pvu1g1289 1 34956932 34960420 Pvu7g2554 7 48740800 48745098 PCT