Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1281 ATGGGTAGCAGAAGTAGAACGGTAAACGTTACCAGTAAGGACACCAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCCCGCATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGTGTTGAGGATACCATTAATCTTAGCAGAAATCCAGTGTTTAGTCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGAGCTTTAAATAAGTCAATTGTAACATCGGATATAAACCTCTCTGCTGCTATTGCTGGGTCTCAGACATTGGCATTACAGAAAGATGCACAACCAACTCTTGCTTCAACATCTGGTCATCGGGAGAATTGGGGAGAGACTAACATGGCTGATGCTAGCCCCAGGACTGATACTTCAACAGATGACACAGAAGACAAAAATCAACTGCCTGAAAGGGGTGAATCCAGCGATAGATCTAAAGATAAATCAGATCAAAAGACACTAAGACGTCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGATTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAGTATGCTCGATGGTTAGAAGAGCATAACAGGCAAACAAATGAGCTAAGGGCTGCAATAAATTCCCATGCTGGAGATATTGAACTTCGAACAATTGTTGATAATTTCATGGCTCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCATTTGGAGCCTTTAACTGAGCAACAATTGATGGGCATATACAATTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCACTGTCTGAGACATTGGCTAATGGTTCACCCAGCTCATCGGGTTCCTCAGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCTATGGGAAAGCTTGGTACTCTAGAGGGTTTTCTTCGCCAGGCTGACAATCTGAGACAGCAAACACTACAACAAATGCTTCGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTCGCAATTAGCGACTATTTCTCGCGACTGCGAGCCCTGAGTTCTCTGTGGCTTGCCAGGCCAAGGGAGTGA 1383 0.4519 MGSRSRTVNVTSKDTNKVVNGMPSYAPPLPSSSSMGIEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPVFSQMKSNSQALGADIQFGALNKSIVTSDINLSAAIAGSQTLALQKDAQPTLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPSSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1281 460 CDD bZIP_HBP1b-like 175 227 - -
Pvu1g1281 460 Gene3D - 174 226 - -
Pvu1g1281 460 MobiDBLite consensus disorder prediction 1 38 - -
Pvu1g1281 460 MobiDBLite consensus disorder prediction 119 177 - -
Pvu1g1281 460 MobiDBLite consensus disorder prediction 119 145 - -
Pvu1g1281 460 Pfam Seed dormancy control 258 333 IPR025422 GO:0006351|GO:0043565
Pvu1g1281 460 Coils Coil 194 221 - -
Pvu1g1281 460 Pfam Basic region leucine zipper 171 217 IPR004827 GO:0003700|GO:0006355
Pvu1g1281 460 PANTHER TGACG-SEQUENCE-SPECIFIC DNA-BINDING PROTEIN TGA-2.1 62 460 - -
Pvu1g1281 460 MobiDBLite consensus disorder prediction 1 19 - -
Pvu1g1281 460 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Pvu1g1281 460 PANTHER TRANSCRIPTION FACTOR TGA9 62 460 - -
Pvu1g1281 460 MobiDBLite consensus disorder prediction 146 177 - -
Pvu1g1281 460 ProSiteProfiles DOG1 domain profile. 240 457 IPR025422 GO:0006351|GO:0043565
Pvu1g1281 460 SMART brlzneu 171 234 IPR004827 GO:0003700|GO:0006355
Pvu1g1281 460 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Pvu1g1281 460 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1281 Pvu-Chr1 34642377 34648835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1281 138 460 bZIP Transcription Factor Family AT3G12250 75.227 1.10e-174 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu1g1281 DOG1 5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1281 K14431 - gmx:778136 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1281 1 34642377 34648835 Pvu1g1281 1 34642377 34648835 ECH