Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1260 ATGCACCACTTTGCCATGGACAACTCTCACCTTCTTCAATTCCTTCCCAACACCACGGCCACCAACACCACCAACCCCTTCTTCCACACTGCACCACACACCACCAACATCATGCACCAACACCACACCCTCTCTAATAACTCCTCCTCCAATAACTTCTACCCCTTTCATGTCTCCCAAATTACCCCAACACCCTCCCACCAAGATAGAGCCCTTGCTGCCATGAAAAACCACAAGGAAGCTGAGAAGAGGAGGAGGGAACGAATCAACTCCCACCTCGATGAGCTTCGCACTCTTCTTCCTTGCAATTCCAAGACAGACAAGGCTTCGCTTCTGGCGAAGGTTGTGCAGCGAGTGAAGGAGTTGAAGCAGCAGACGTCGGAGATAACGGAGCTGGAGACGGTTCCGTCGGAAACTGACGAGATCACGGTGCTCTCCACCGGCGGGGACTACGGCGGCGATGGGAGACTGGTATTCAAGGCCTCGCTGTGCTGCGAGGACCGCTCCGACCTCATCCCAGACCTCATAGAAATCCTGAATTCGCTTCACCTGAAAACCCTCAAAGCAGAAATGGCCACGCTCGGAGGAAGAACGCGCAACGTTCTCGTGGTGGCTGCAGACAAAGAACACAGCATCGAATCCATCAATTTCCTTCAGAACTCGCTCAAGTCCTTGCTAGACAGGTCCAATTCCAGCGACAGATCAAAACGACGCCGTGGCCTAGACCGAAGGCTAATGTCTTAA 744 0.5323 MHHFAMDNSHLLQFLPNTTATNTTNPFFHTAPHTTNIMHQHHTLSNNSSSNNFYPFHVSQITPTPSHQDRALAAMKNHKEAEKRRRERINSHLDELRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTGGDYGGDGRLVFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESINFLQNSLKSLLDRSNSSDRSKRRRGLDRRLMS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1260 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 130 IPR036638 GO:0046983
Pvu1g1260 247 Coils Coil 79 99 - -
Pvu1g1260 247 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Pvu1g1260 247 MobiDBLite consensus disorder prediction 228 247 - -
Pvu1g1260 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Pvu1g1260 247 SMART finulus 79 128 IPR011598 GO:0046983
Pvu1g1260 247 CDD bHLH_AtAIG1_like 68 144 - -
Pvu1g1260 247 Gene3D - 68 134 IPR036638 GO:0046983
Pvu1g1260 247 MobiDBLite consensus disorder prediction 229 247 - -
Pvu1g1260 247 PANTHER TRANSCRIPTION FACTOR BHLH30 32 246 IPR045847 GO:0003700|GO:0006355
Pvu1g1260 247 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 32 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1260 Pvu-Chr1 34204192 34206220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1260 53 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 68.852 1.87e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g1260 HLH 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1260 - K22484 pvu:PHAVU_001G121200g 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1260 1 34204192 34206220 Pvu1g1260 1 34204192 34206220 ECH
Pvu1g1260 1 34204192 34206220 Pvu7g2501 7 48237680 48239078 PCT