Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1252 ATGCTCTTCCTTGAGTCTGATCATTACAAACTCTTGACCCTTCACAACACCTTTGCTACCAACTCAGTGACCATTTCACAACTTCATTTCTTTTCCTTCCTGAAACAAATGGCATCCAGTTCAATCTCAGCCTCAGGTTCATGGAGTGTTAAGGACAACAAGGCCTTTGAGAAGGCTCTAGCTGTTTATGACAAGGACACCCCTGACCGTTGGTACAATGTTGCCCATGCTGTTGGTGGCAAAACTCCAGAGGAAGTCAAGAGACACTACGAACTCCTTGTCCAGGATGTTAAGCATATTGAGTCAGGACGAGTGCCATTCCCAAACTACAAGAAAACTGCAGCCTCTGATCAGGAGGAGAAAAGGCTGAGGAATTTGAACCTCCAGTGA 390 0.4564 MLFLESDHYKLLTLHNTFATNSVTISQLHFFSFLKQMASSSISASGSWSVKDNKAFEKALAVYDKDTPDRWYNVAHAVGGKTPEEVKRHYELLVQDVKHIESGRVPFPNYKKTAASDQEEKRLRNLNLQ* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1252 129 ProSiteProfiles Myb-like domain profile. 46 94 IPR001005 -
Pvu1g1252 129 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Pvu1g1252 129 SMART sant 44 96 IPR001005 -
Pvu1g1252 129 CDD SANT 54 94 IPR001005 -
Pvu1g1252 129 Gene3D - 38 107 - -
Pvu1g1252 129 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 37 129 IPR044636 GO:0003700
Pvu1g1252 129 ProSiteProfiles SANT domain profile. 43 98 IPR017884 -
Pvu1g1252 129 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 37 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1252 Pvu-Chr1 33981178 33982220 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu1g1252 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1252 - - gmx:100818368 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1252 1 33981178 33982220 Pvu7g2494 7 48190783 48192713 PCT