Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1251 ATGCATTCAGACAAATTCCTTCTCGGTTTCATGGAGGCTTACATCGTCGGCGTACAGAACTATTCGGCCACCGTCTGCGGCCGCTCCGTCTTCCTCCTTATCCGTGAGCCCTACAACATTCACGACGCCAACGCCATCATCGTCACCAACATCTACGGTCACACCATCGGCTACATTGAACGCCCCGTCGCCGCCATCCTCTCCCCTCTCATCGATGACGACATCATCACCGTCGAAGCCATCGTACCCGACGCCCGCAAAAGCTGGCGAATTCTCTGCCAAATCCACATCTTCGCCCGCCTCCCCGCCTTTGATGCCGTCAAAGACGCCGTCTCCCGTTCTTCCCGCAAACTCATCACCGAGTCCGAAGCCTCCTTCACCCTCTCTGACTCCGCCGCCGTTAAGGCTACCAAGGCGGAGAAGAAGTACATGACCGTCGACGCCATTTTTGACCTTGTGAACAGCAACCTCACCAACAAGAACCGAGCCATCTTTATCTTGGAGCCTCCCAGGAGCATCATCAGAACCGAGCTTCTCCCTCACCAGAAGGAGGGTCTCGCGTGGCTCGTTCGCAAAGAAAAAGCTGATGACCTGCCACCCTTTTGGGAAGAAAACAATGGCTTATTCGTAAATATCTTAACCGGTTATCAAACCAATAGAAGGCCTGACCCTTTGCGAGGTGGCATCGTCGCCGATGGGATGGGGTTAGGAAAGACCTTAACTTTGCTTTCTCTGATTGCTTTTGATAAAAGGAGCCAAATGGGTGTCTCTAAAAAATGGAGAACGGACAGAAAGTCGGTTTCTTTAGAGAAGCGACGCAGGAATGAAGGTGAGTGCTCCCTTGAAAGCGAAGTGAGAACAAATGCAACGCTGGTGGTGTGTCCTCCTTCTGTTATGTCGGCATGGATAACGCAATTGGAGGATCACACAGTGCCTGGTGGATTGACGACTTACATGTATTACGGGGAAAAAAGGACACATGATACTGAGGAGCTTAAGAAGTATGATTTGGTGTTGACTACTTACTCTACTCTGTCTAATGAACCGGAGGAGATGCCGGCAAAGCAAATGGAGTGGCGGAGAATTATATTGGACGAAGCACACACCATCAAGAATTTCACGGCCAAACTCAGTAAGGCAGTTTGCAACTTAAAAGGTAAGTACAGATGGGCAGTCACAGGGACACCGATTCAAACTGGTTGCATTGATTTGTTTTCTTTCATGCTCTTTTTGCGGTTTAGTCCGTTTTCGGTACGAGCACATTGGAGAGCGTTTGTGCAACGCCCTCTTAATCAGGGCTTAGATAAAGGGCTCACCAGATTGCAGGTTTTGATGGAAGCAATTGCTTTGCGCAGAACAAAAGATATGGCATTGGTGTGTCTGCCACCTAAAACCGTTGAGATTTGTTATGTTGAGCTTTCTATGGAAGAACGTCAGCTGTATGATCGGGAGAAAGAGAAAACAAAGGCATTGTTGAGAAGAAGTTTTATCTATGATGATAGTCAACTTTCCCAGTATACTGAGATGCTAAGTAGTATTCTAAGACTTCGCCAAATCTGTGTTGATTTGAAATTGTGTAAATTTCACTCACAACGCAGCATTACAAATAATGAAGGAGAAGCAGTTGTTTCTTATAATCCTGAATTGCTGCAAACATTACTTGCGCAGCTGCAAGAAGGTGAAGATTTTGAATGTCCAATTTGTTTATCTTCTCCAATGGAAATTGTGATCACACGTTGTGCTCACATTTTCTGCCGTGACTGTATCCTGAGATCTCTAGAAACGAGAAGTGGTTGTCCTCTTTGCCGGCGAAAACTCTTGGAATCTGACTTGTTCTCACCCCCTCCCCAGCCAGAGACAAACAGTGCTGAACCGAGCTCAGCATCAGAAACACCATTATCGTCCAAGGTTTCTACCCTGATGAAATTTCTGAATGAATCAAGGGACCAGCATCCAGCTGTAAAGTCAGTTGTATTTTCACAATTTCGAAAGTTGCTTTTGTTACTTGAAGAGCCTCTGAATGCAGCTGGTTTCAAGACTTTGCGTCTTGATGGGTCAATGAATGCTAGACACAGAGCCAATGTTATTGAGCAGTTTCAAGTGGGAAAAAGTGATGGCCCAACTGTTCTGCTGGCAAGCCTCAGGGCTTCAAGTGCAGGTATAAATCTCACAGCTGCCTCTAGACTCTACTTTATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAGGCAATGGATCGTGTCCACCGCATTGGACAGAAACAGCCCGTGAAGATCGTTCGATTCATTGCTAAAAACAGCATTGAAGAGAAACTATTGGTGTTGCAGGAAAGGAGGAAAGAACTGTCCACGGAAGAACCATCTGAGATGGGATCAAAGGGCGTGGGCATAAAAGATATTAAATTCCTTCTAGAATCCTAG 2421 0.4672 MHSDKFLLGFMEAYIVGVQNYSATVCGRSVFLLIREPYNIHDANAIIVTNIYGHTIGYIERPVAAILSPLIDDDIITVEAIVPDARKSWRILCQIHIFARLPAFDAVKDAVSRSSRKLITESEASFTLSDSAAVKATKAEKKYMTVDAIFDLVNSNLTNKNRAIFILEPPRSIIRTELLPHQKEGLAWLVRKEKADDLPPFWEENNGLFVNILTGYQTNRRPDPLRGGIVADGMGLGKTLTLLSLIAFDKRSQMGVSKKWRTDRKSVSLEKRRRNEGECSLESEVRTNATLVVCPPSVMSAWITQLEDHTVPGGLTTYMYYGEKRTHDTEELKKYDLVLTTYSTLSNEPEEMPAKQMEWRRIILDEAHTIKNFTAKLSKAVCNLKGKYRWAVTGTPIQTGCIDLFSFMLFLRFSPFSVRAHWRAFVQRPLNQGLDKGLTRLQVLMEAIALRRTKDMALVCLPPKTVEICYVELSMEERQLYDREKEKTKALLRRSFIYDDSQLSQYTEMLSSILRLRQICVDLKLCKFHSQRSITNNEGEAVVSYNPELLQTLLAQLQEGEDFECPICLSSPMEIVITRCAHIFCRDCILRSLETRSGCPLCRRKLLESDLFSPPPQPETNSAEPSSASETPLSSKVSTLMKFLNESRDQHPAVKSVVFSQFRKLLLLLEEPLNAAGFKTLRLDGSMNARHRANVIEQFQVGKSDGPTVLLASLRASSAGINLTAASRLYFMEPWWNHAVEEQAMDRVHRIGQKQPVKIVRFIAKNSIEEKLLVLQERRKELSTEEPSEMGSKGVGIKDIKFLLES* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1251 806 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 256 785 - -
Pvu1g1251 806 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 3 247 - -
Pvu1g1251 806 SMART ring_2 565 602 IPR001841 -
Pvu1g1251 806 CDD SF2_C_SNF 630 763 - -
Pvu1g1251 806 SUPERFAMILY RING/U-box 548 609 - -
Pvu1g1251 806 ProSiteProfiles Zinc finger RING-type profile. 565 603 IPR001841 -
Pvu1g1251 806 Pfam HIRAN domain 11 95 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pvu1g1251 806 SMART HIRAN_2 8 101 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pvu1g1251 806 ProSitePatterns Zinc finger RING-type signature. 580 589 IPR017907 -
Pvu1g1251 806 Gene3D - 462 795 IPR027417 -
Pvu1g1251 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 786 IPR027417 -
Pvu1g1251 806 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 256 785 - -
Pvu1g1251 806 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 3 247 - -
Pvu1g1251 806 Coils Coil 765 785 - -
Pvu1g1251 806 MobiDBLite consensus disorder prediction 614 632 - -
Pvu1g1251 806 Gene3D - 214 453 IPR038718 -
Pvu1g1251 806 Pfam Helicase conserved C-terminal domain 636 752 IPR001650 -
Pvu1g1251 806 Pfam SNF2-related domain 181 523 IPR000330 GO:0005524|GO:0140658
Pvu1g1251 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 556 610 IPR013083 -
Pvu1g1251 806 MobiDBLite consensus disorder prediction 613 632 - -
Pvu1g1251 806 SMART ultradead3 174 426 IPR014001 -
Pvu1g1251 806 Pfam Zinc finger, C3HC4 type (RING finger) 562 606 - -
Pvu1g1251 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 452 IPR027417 -
Pvu1g1251 806 SMART helicmild6 667 752 IPR001650 -
Pvu1g1251 806 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 414 IPR014001 -
Pvu1g1251 806 Gene3D - 2 118 - -
Pvu1g1251 806 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 636 806 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1251 Pvu-Chr1 33949144 33953271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1251 3 785 RAD5 or RAD16-like Gene Family AT5G05130 53.284 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu1g1251 SNF2_N 6.9e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1251 K15711 - gmx:100791783 1057.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1251 1 33949144 33953271 Pvu1g1251 1 33949144 33953271 ECH