Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1250 ATGAGAAGCGGAATTGAGCTGTCGATTTCGTGTTCAAGTTTTGGATCTGCGAGGATGAAGTCTTGGTCAGTGGATGAGTGGAGGGAGTACTTTGTGTCTTCTAAATCGGATATATTTGAGATAATTGAGAACGCGATAATCGTGGCGGCTTCGGATTGTCCGAAGGAGTTTAGAGTGAGGAGGGACACGATTGCGGAGAGGCTGTTCTGTTCCAGCTTGACTCGCTGTGCCGGGTGTGACCGTGTGCAGTTGGCTGCGAGGGGAGTTGGTAAAGAAAGTGATGACGGGGGTTGCAAGAATGCGGTAGAAAGAGATGGGGGTGAGTTCGCTGGAGCAAGCAAAGAGAGCAAGGTCAATGAACGTGGTGATGAGGATGCAGAGATTGATGTGAACGGTGTTAGCAACTATAGTTTTGGTGAGGCTGAGGCATTAACTGATGAGATGGATGAAGAGACTCAGTATGTAGGGGAGATTTTGAGGATCAAAGGTGTTCTGCTTAACCGAGATGAAGAGTCTGAGTCCGTGTTATTTGAATCGTTGAGGAGGCTTCAACTGATGGAGCTCACCGTGGATTGTCTTAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGGAAACGCGGATCAAAGGATATTCGTCAACTTGCAAAGACTCTTATCGATGGCTGGAAACAAATGGTTGATGAATGGGTGAAGGCCACTGCTACTACAGCTATTGCAGCTTCAGATGAAGGCACACCCGATTCAGTTAATCCATCTGTTGTTGATGATGAAGAAGAAGAAGGACTTCCATCACCTCCTATGGATGAAGGGGCCTTCTTTGTTGCTCCAACTGGTTCCATAGAACTTTCGCAGTTCTTTGATGGCATGGACGATGATGGAAATCCTCGACCAAGTGGCCCATCCCACAAGAACCGTGACAGTAATAGCAGAAAGCCAGCCATCCCTAACAGGGAGGACAAGAGTCAACAAGCCAAGAGAAATGATGCTGATGTGCCCGTGAGGCCAAATAAGCCAGTAACCTCTAATTCTGGCCCTGGCAGACCCCTCCAATACAATATGGAAAGAAAAAGTAATGTGGAGCCAAAGATTCAGCAAAAAGTAGAGAACAATTCAGTCACAAGGAGGCCTCCCATTGGTCATCTAGATAAACCCATGCATTCAGATGATGCGAAGCTAGAAGCCACCAAGAGGAGACTTCAGGAGAGTTATCAACAAGCTAAAAATGCCAAGAGGCAGAGAACAATACAAGTTATGGAAATAAATGATCTCCCGAAGCATGTTAACTACCGAAATCCAAATTCAAAGCCTGGTTATCACAATAGGAACCGGGCTATTACTCGAAGGTAG 1353 0.4642 MRSGIELSISCSSFGSARMKSWSVDEWREYFVSSKSDIFEIIENAIIVAASDCPKEFRVRRDTIAERLFCSSLTRCAGCDRVQLAARGVGKESDDGGCKNAVERDGGEFAGASKESKVNERGDEDAEIDVNGVSNYSFGEAEALTDEMDEETQYVGEILRIKGVLLNRDEESESVLFESLRRLQLMELTVDCLKATEIGKAVNPLRKRGSKDIRQLAKTLIDGWKQMVDEWVKATATTAIAASDEGTPDSVNPSVVDDEEEEGLPSPPMDEGAFFVAPTGSIELSQFFDGMDDDGNPRPSGPSHKNRDSNSRKPAIPNREDKSQQAKRNDADVPVRPNKPVTSNSGPGRPLQYNMERKSNVEPKIQQKVENNSVTRRPPIGHLDKPMHSDDAKLEATKRRLQESYQQAKNAKRQRTIQVMEINDLPKHVNYRNPNSKPGYHNRNRAITRR* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1250 450 CDD TFIIS_I 157 229 - -
Pvu1g1250 450 MobiDBLite consensus disorder prediction 298 334 - -
Pvu1g1250 450 MobiDBLite consensus disorder prediction 240 274 - -
Pvu1g1250 450 Pfam TFIIS helical bundle-like domain 180 228 IPR017923 -
Pvu1g1250 450 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 21 446 IPR044805 -
Pvu1g1250 450 SMART TFS2_5 155 230 IPR003617 GO:0005634
Pvu1g1250 450 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 146 241 IPR035441 -
Pvu1g1250 450 MobiDBLite consensus disorder prediction 428 450 - -
Pvu1g1250 450 MobiDBLite consensus disorder prediction 286 393 - -
Pvu1g1250 450 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 154 235 IPR035441 -
Pvu1g1250 450 Coils Coil 391 414 - -
Pvu1g1250 450 ProSiteProfiles TFIIS N-terminal domain profile. 156 231 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1250 Pvu-Chr1 33857620 33861626 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pvu1g1250 Med26 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1250 - - gmx:100799367 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1250 1 33857620 33861626 Pvu1g1250 1 33857620 33861626 ECH
Pvu1g1250 1 33857620 33861626 Pvu7g2462 7 47933685 47940835 PCT