Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1245 ATGGCGTCAAGAGCAATAATTCAACAACAAGCCAGAGGTGAAGCGGTAATAGGAGGAGGAAAGCAACAGAAGAAGAACGGTGCAGCGGATGGAAAGAATCGCAAGGCGTTGGGTGATATTGGGAATTTGGCAAATGTAAGAGGAGTTGAAGTCAAGCCTCATCGCCCCATCACAAGGAGTTTTGGTGCCCAACTACTTGCCAACGCACAAGCCGCAGCAGTTGTAGAGAATAACAAGAAACAAGCCTGTGCTAATGTGGCTGGTCCTGCTCCTGTTGCTGCGGCCAAGAGAGTCCCCAAGCCGGCTCAGAAGAAAGTTACGGTCAAACCAAAGCCTGAGGAAGTCATTGACATTGAAGATAGTCCAGACAAAGAGGTCCAGAAAGACAAGAAGAATTCACAAGCTTTTACTTCAGTTCTCACCGCTAGAAGCAAGGCAGCATGTGGCATAACTAACAAACCAAAGGAGAATATTATTGACATCGATGCCAGTGATGTTGACAACGAACTTGCTGCTGTGGAGTATATTGATGACATTTACAAGTTCTATAAACTTGTTGAGCACGAAAGTCGCCCCCGTGACTACATAGACTCTCAACCTGAGATAAATGAGAGGATGAGAGCTATTTTGATTGATTGGCTGATTGATGTCCACAGCAAGTTTGAACTTTCACCTGAGACCCTTTACCTGACTATCAATATAATCGATCGATTCCTAGCAGTTAAGACTGTTCCAAGAAGGGATCTGCAATTGGTAGGTGTCAGTGCCATGCTAATGGCATCCAAGTATGAAGAAATCTGGCCACCTGAGGTTAATGACTTTGTACACCTCTCAGATAGGGCTTATACTCATGAACAGATACTTGTTATGGAGAAAATTATACTAGGAAAGTTGGAATGGACTTTGACTGTTCCCACAACTTTTGTTTTCCTAGTGCGTTTTATCAAGGCCTCAGTCCCAGATCTGGAGTTGGAAATCATGTCCCATTTTCTATCTGAGTTGGGAATGATGAATTACGCGACCTTAAGGTATTGCCCATCAATGCTTGCTGCCTCAGCAGTCTTTGCAGCTAGATGCACTCTGAACAAGACTCCCCTTTGGAATGAGACACTTAAGTTGCACACGGGTTACTCACAAGAACAACTTATGGATTGTGCTAGACTATTGGCGAGCTTCCACTCCTCTGTTGGAAATGGAAAGCTGAAGGTTGTGTACAGAAAGTATTCTGATCCTCAGAAGGGAGCTGTTGCTGTGCGCCCACCAGCTAAATATCTTCTGCCTGAAGGTTCTGCCTCCCAATAA 1302 0.447 MASRAIIQQQARGEAVIGGGKQQKKNGAADGKNRKALGDIGNLANVRGVEVKPHRPITRSFGAQLLANAQAAAVVENNKKQACANVAGPAPVAAAKRVPKPAQKKVTVKPKPEEVIDIEDSPDKEVQKDKKNSQAFTSVLTARSKAACGITNKPKENIIDIDASDVDNELAAVEYIDDIYKFYKLVEHESRPRDYIDSQPEINERMRAILIDWLIDVHSKFELSPETLYLTINIIDRFLAVKTVPRRDLQLVGVSAMLMASKYEEIWPPEVNDFVHLSDRAYTHEQILVMEKIILGKLEWTLTVPTTFVFLVRFIKASVPDLELEIMSHFLSELGMMNYATLRYCPSMLAASAVFAARCTLNKTPLWNETLKLHTGYSQEQLMDCARLLASFHSSVGNGKLKVVYRKYSDPQKGAVAVRPPAKYLLPEGSASQ* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1245 433 Pfam Cyclin, N-terminal domain 178 302 IPR006671 -
Pvu1g1245 433 PANTHER CYCLINS 21 427 IPR039361 -
Pvu1g1245 433 CDD CYCLIN 303 389 IPR013763 -
Pvu1g1245 433 ProSitePatterns Cyclins signature. 207 238 IPR006671 -
Pvu1g1245 433 SUPERFAMILY Cyclin-like 167 302 IPR036915 -
Pvu1g1245 433 Gene3D - 178 417 - -
Pvu1g1245 433 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 21 427 - -
Pvu1g1245 433 Pfam Cyclin, C-terminal domain 305 419 IPR004367 -
Pvu1g1245 433 MobiDBLite consensus disorder prediction 1 36 - -
Pvu1g1245 433 Gene3D - 192 303 - -
Pvu1g1245 433 SMART cyclin_7 212 296 IPR013763 -
Pvu1g1245 433 SMART cyclin_7 309 391 IPR013763 -
Pvu1g1245 433 PIRSF Cyclin_A_B_D_E 1 433 IPR039361 -
Pvu1g1245 433 CDD CYCLIN 206 295 IPR013763 -
Pvu1g1245 433 SUPERFAMILY Cyclin-like 304 424 IPR036915 -
Pvu1g1245 433 SMART Cyclin_C_2 305 422 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1245 Pvu-Chr1 33681952 33684750 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1245 1 426 Core Cell Cycle Gene Families AT4G37490 53.111 5.71e-151 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1245 K21777 - gmx:547919 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1245 1 33681952 33684750 Pvu1g1245 1 33681952 33684750 ECH