Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1243 ATGAAGGAAGAGGATTCCAATTGGTTTTCGCGATGGGAAGAGGAACTCCCACCGCCAGAGGATCTCATGCCCCTATCGCAAACCCTAATCACGCCCGATCTAGCCATGGCCTTCGACATCAGAAACCCCCACACCACCAACCTCAACACCGCCCAACAGCTTCAACACCAACAACAACAACAACCACCGCAACAACAACAGCAACAACCTTCCAACCCTTCCTCGCTCCCCAACCCCCAACAACCCACCTCCGCTGAGTTCGCCGACTCCGGCGAGCTCGGCTCCGGCACTGCCGGCGAGGAGCCCGCTCGAACCCTCAAGCGCCCGCGCCTTGTGTGGACCCCACAACTCCATAAGCGCTTCGTCGATGCCGTCGCCCACCTCGGCATAAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGATGGTTTGACCAGAGAAAACGTTGCCAGCCACTTGCAGAAGTACCGTCTCTATCTTAAACGCATGCAGGGGATATCTGCCGCCGGACCCGGTGGTCCCGGAGGCGGCGCCTCCGGCGCCGTCGCCGACCCTGCCACTGACCACCTTTTCGCCAGCTCCCCGGTGCCGGCGCATTTCCTGCACCCCGCAACGAGGCCAAATTCGGATCACTTCCTTCCGTTTGTGCCGGTGCCGGCGCTCCACCACCACCAGCAGCAACAGCAGCAGCAGATGGTCGCGGCGGCGCAGTACCATAGGCAGGTGGGGCATTTCGGGTCGCCGCCGAACGGGCACTTCGAGAACCCGTTCATGTCTAGGCCGAATCTTCAGAGGATAGGTGGGGGTGGGGGTGGTCCTGTGCATAACCACCACTCTGTGAGTGGCTATGTGGAGGATATGGAATCTGCTAATGCTGCATCTGGAGGTAGAAAGGTTCTTACCCTGTTTCCAACTGGAGATGATTGA 936 0.5929 MKEEDSNWFSRWEEELPPPEDLMPLSQTLITPDLAMAFDIRNPHTTNLNTAQQLQHQQQQQPPQQQQQQPSNPSSLPNPQQPTSAEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPGGPGGGASGAVADPATDHLFASSPVPAHFLHPATRPNSDHFLPFVPVPALHHHQQQQQQQMVAAAQYHRQVGHFGSPPNGHFENPFMSRPNLQRIGGGGGGPVHNHHSVSGYVEDMESANAASGGRKVLTLFPTGDD* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1243 311 Pfam Myb-like DNA-binding domain 112 160 IPR001005 -
Pvu1g1243 311 MobiDBLite consensus disorder prediction 42 90 - -
Pvu1g1243 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 164 IPR017930 -
Pvu1g1243 311 SUPERFAMILY Homeodomain-like 105 165 IPR009057 -
Pvu1g1243 311 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 311 IPR044841 GO:0003700|GO:0006355
Pvu1g1243 311 MobiDBLite consensus disorder prediction 1 107 - -
Pvu1g1243 311 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 311 - -
Pvu1g1243 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 109 161 IPR006447 GO:0003677
Pvu1g1243 311 MobiDBLite consensus disorder prediction 1 18 - -
Pvu1g1243 311 Gene3D - 105 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1243 Pvu-Chr1 33667424 33668359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1243 1 311 G2-like Transcription Factor Family AT3G10760 57.429 1.30e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu1g1243 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1243 - - gmx:100815363 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1243 1 33667424 33668359 Pvu1g1243 1 33667424 33668359 ECH