Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1228 ATGGCCCCGCAACGCTGGTGCATGAGTTGGTACCCTGACGACCATAATGTTAAGATTATGCACTCCAGAAGAGGCAAGTCCTGTGCAGCGGCTGCGCTAAGCCTATGCAACGCGTCACAGGATGCCTCTTTAGAAAAGCCTCTTAACCGAAAGCTCCAAAGGAGGGAAACCAATAACGGCTTATCCTGTTTTGGAAACTTGAAGTTCTTCTCTTTTTCTATTTCTGTCATGCCAATGGCAAATTCTCATCAAAATCAACTCAAAACTGAAGACTCAGAATTCCCTTTCAAGGAAATTGGAAATGAAGGTCTCACAAAGCGGATTCTCAGAAAAGGAGTCACTTGGCAAACTCCATTATCTGGAGATGAAGTGGAAGTTCATTTCAGAGGACATGTTGAGAATGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTCCACCTTTCGTTTCAAATTAGGCCAGTGTGAAGTTATCAAAGGCTGGGATGAAGGAGTTGCCACCATGAAGAAAGGAGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGGGAAGAAGGGTCTCCTCCATTGATTCCTCCAAATGCAACTCTCATTTATGACATTGAAATGCTGACTTGGAGCACCATAAGGGATTTGACTGGAGATGGAGGAATCATGAAAAAGCTAACAAGAGAGGGAGAAGGGTGGGCAACTCCCAGAGAGGCTGATGAGGTGCTAGTGAAATATGAAGCAAGGCTGGAGAATGGGATGCTTGTCTCAAAGTCTGATCAGGGAGTGGAGTTTAATGTAAGTGATGGCTATCTATGTCCTGCTATGAGTATAGCAGTAAAGACAATGAGAAAGGGCGAAGTGGCAGACTTAGCAGTGAGATTATTTTACGGGCACAGTCAAAATTCAAATATGATCACTGAGCTAGATGGTGTTCCTCCACCAGATTCTAATTTAACTAGTATCAAGCTTGAGCTGGTATCATGGAAAATTGTTACTGATGTCACAGGAGACAAGAAGATAATGAAAAAAATTAAGAAAGTGGGTGAGGGGTTTGATCGTCCTAACGAGGGATCCCAAGTGAAAGTGATATATTTGTGTAAAGGGGAAGATGATACGATTATTGAGAGGAAAGGATCAGAGGAAGAACCTTTTGAGTTTACAACTCAGGAAGAACAAGTACCCGAGGGTCTAGAAAGAGCAATAATGACAATGAAGAAAGCAGAACAAGCTCTTGTAACCGTCGATGCAGAATACTTGTGCGGCTGTAATAATTCACAGGGAAACACAGAAAATCATAAAGTCCTTTATTATGAAGTTGAGTTGGTTGATTTTGTTAAGGAAAAACCATTTTGGAAAATGGACACACAAGAGAAAATAGAAGCTTGTGAGAGGAAGAAGTATGATGGAAATCTGCTGTTCAAAGCTGAAAATTTCATGCACGCATCTAAGAAATATGAAAAGGCTGTAAAGTACATTGAGTTTGATCACTCATTCAGTGAAGATGAGAAGCATCGCTCTAATACCTTACGTTTATCCTGTAACTTGAACAATGCTGCCTGTAAACTTAAATTGGGAGAGTACATTGAAGCTTCAAGACTATGCACAAAGGTTCTAGAACAAGACCCTTTAAATATCAAGGCTCTTTATAGAAGAAGCCAAGCATACGTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTTTGACTATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTGAAACTTAAGCAAAAGGAATACAGTAGATATGAAGCTGGCATCTTCAGCACAATGGTTTCAAGAATGAGCTAG 1833 0.4075 MAPQRWCMSWYPDDHNVKIMHSRRGKSCAAAALSLCNASQDASLEKPLNRKLQRRETNNGLSCFGNLKFFSFSISVMPMANSHQNQLKTEDSEFPFKEIGNEGLTKRILRKGVTWQTPLSGDEVEVHFRGHVENGASLESSYDKGSTFRFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGEEGSPPLIPPNATLIYDIEMLTWSTIRDLTGDGGIMKKLTREGEGWATPREADEVLVKYEARLENGMLVSKSDQGVEFNVSDGYLCPAMSIAVKTMRKGEVADLAVRLFYGHSQNSNMITELDGVPPPDSNLTSIKLELVSWKIVTDVTGDKKIMKKIKKVGEGFDRPNEGSQVKVIYLCKGEDDTIIERKGSEEEPFEFTTQEEQVPEGLERAIMTMKKAEQALVTVDAEYLCGCNNSQGNTENHKVLYYEVELVDFVKEKPFWKMDTQEKIEACERKKYDGNLLFKAENFMHASKKYEKAVKYIEFDHSFSEDEKHRSNTLRLSCNLNNAACKLKLGEYIEASRLCTKVLEQDPLNIKALYRRSQAYVKTSDLEKAEADIKRALTIDPNNRDIKLEYKELKLKQKEYSRYEAGIFSTMVSRMS* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1228 610 SUPERFAMILY FKBP-like 326 463 - -
Pvu1g1228 610 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 233 301 IPR001179 GO:0003755
Pvu1g1228 610 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 118 206 IPR001179 GO:0003755
Pvu1g1228 610 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 352 441 IPR001179 GO:0003755
Pvu1g1228 610 SUPERFAMILY TPR-like 451 598 IPR011990 GO:0005515
Pvu1g1228 610 SUPERFAMILY FKBP-like 94 206 - -
Pvu1g1228 610 Gene3D - 77 210 IPR046357 GO:0003755
Pvu1g1228 610 SUPERFAMILY FKBP-like 214 299 - -
Pvu1g1228 610 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 237 326 IPR001179 GO:0003755
Pvu1g1228 610 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 356 444 IPR001179 GO:0003755
Pvu1g1228 610 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 436 610 - -
Pvu1g1228 610 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 79 331 - -
Pvu1g1228 610 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 330 426 - -
Pvu1g1228 610 ProSiteProfiles TPR repeat profile. 544 577 IPR019734 GO:0005515
Pvu1g1228 610 PANTHER PEPTIDYLPROLYL ISOMERASE 79 331 - -
Pvu1g1228 610 PANTHER PEPTIDYLPROLYL ISOMERASE 436 610 - -
Pvu1g1228 610 PANTHER PEPTIDYLPROLYL ISOMERASE 330 426 - -
Pvu1g1228 610 Coils Coil 396 416 - -
Pvu1g1228 610 Pfam Tetratricopeptide repeat 545 577 IPR019734 GO:0005515
Pvu1g1228 610 Gene3D Tetratricopeptide repeat domain 447 603 IPR011990 GO:0005515
Pvu1g1228 610 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 121 209 IPR001179 GO:0003755
Pvu1g1228 610 Gene3D - 211 328 IPR046357 GO:0003755
Pvu1g1228 610 Gene3D - 329 446 IPR046357 GO:0003755
Pvu1g1228 610 SMART tpr_5 461 494 IPR019734 GO:0005515
Pvu1g1228 610 SMART tpr_5 544 577 IPR019734 GO:0005515
Pvu1g1228 610 SMART tpr_5 510 543 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1228 Pvu-Chr1 33121037 33127856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1228 98 609 Calmodulin-binding Proteins AT5G48570 53.950 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1228 - - pvu:PHAVU_001G118200g 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1228 1 33121037 33127856 Pvu1g1228 1 33121037 33127856 ECH