Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1210 ATGGACCAAGACCAGCGCCACGTCAGCGCCACCAGCGCAACTAACAATCCCGTGCTCCGCTGCACCACCGTCTGCACTCTCCCCTTCGCGCGCCTTGTCGCCGCCTCCCGCCGCCGCCTCTTCCTCTCCGACTGTGCTGACCGTCGATCCGATGACGACGACGGCTCTGAGTGCGGCTACTCCCGCGCGGTGTTGGTCCTCGATATGGTCTGGAACCTCGCCTTCGTCGTCGTGGCCGCCGGCGTCCTTCTCTCAACACTGCGCGAGCGGCCGTCCACGCCGCTCAGACTCTGGCTCTGCGGCTACGCGTTCGAGTGCATTCTTCATATGGCTTTCGTCTTCTTTGAATTCCGAAGTGGAGTTCGCGATTCCTTTTCTCACACTACCTATAGCATTGTGAAGAAGCTAGAGCCTATGAACACTCTGGCATCTTCTGTTTGGTGGGTGTTTGGATTTTATTGGATTGTTGCGGGTGGTCAAGCACTTTTGGAAGATTCTCCGCGGCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACATATTTTTTATTATCTTTTGCATTGGGATGGCATGTGTAGTTTTCTTCGCTCTCTTCTGCATCATCCCAATAATAGCTCTAGCTTATGCTATGAAAATCAGAGAAGGCGCATCAGAAGAAGATATCAGGTCACTTCCTATGTATATGTTTAGTCAGTCAAATTCATTGGTGATGGTTGATGACAACAAGAAGCAACTTGTTAATGCAAGAGTAGATTCATGCAATGGAAGCCATATGAGTGAACTTTCTCTCAATTCAGATGATTCTGAATGCTGTATCTGCCTATGTCCATATGCTGATGGAGCAGAAGTGTATCGCCTTCCTTGTACCCACCATTTTCACTGTGAATGCATTGGCCGTTGGCTTCGAACAAAAGCAACCTGCCCACTCTGCAAATTTAATATCCTTAGAGGTGACACGTTGGTTTGA 969 0.4974 MDQDQRHVSATSATNNPVLRCTTVCTLPFARLVAASRRRLFLSDCADRRSDDDDGSECGYSRAVLVLDMVWNLAFVVVAAGVLLSTLRERPSTPLRLWLCGYAFECILHMAFVFFEFRSGVRDSFSHTTYSIVKKLEPMNTLASSVWWVFGFYWIVAGGQALLEDSPRLYWLTVVFLAFDIFFIIFCIGMACVVFFALFCIIPIIALAYAMKIREGASEEDIRSLPMYMFSQSNSLVMVDDNKKQLVNARVDSCNGSHMSELSLNSDDSECCICLCPYADGAEVYRLPCTHHFHCECIGRWLRTKATCPLCKFNILRGDTLV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1210 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 318 IPR013083 -
Pvu1g1210 322 PANTHER TARGET OF ERK KINASE MPK-1 7 322 - -
Pvu1g1210 322 SUPERFAMILY RING/U-box 265 316 - -
Pvu1g1210 322 SMART ring_2 271 311 IPR001841 -
Pvu1g1210 322 Pfam Ring finger domain 270 312 IPR001841 -
Pvu1g1210 322 PANTHER RING-FINGER UBIQUITIN LIGASE 7 322 - -
Pvu1g1210 322 CDD RING-H2_RNF111_like 270 314 - -
Pvu1g1210 322 ProSiteProfiles Zinc finger RING-type profile. 271 312 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1210 Pvu-Chr1 32700138 32704627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1210 38 319 C3H Transcription Factor Family AT1G68070 43.854 3.04e-86 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1210 - - gmx:100806994 578.17