Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1196 ATGACTAATCCGGCACAAGAGAATGTTAATGAAGGCACTTCCAGCAGAGCAAATAAGCAGAAAGGCAAGGTCTCAAAGCGTGTCAGGTCACGAGCATCATCTCCTCCATGCGCAGCATGCAAGAAAATGAGGAAAAAGTGCAGCAGTGACTGCATCTTTGCACCTTATTTTGGTTCTAGCCAGGGCTCAGCAAGGTTTGAAGCAGTGCACAAGGTGTTTGGTGCAAACAACTTGTCAAAACTATTGCTAGAAGTTGAAGTGGCTCATCGTAATGAGGTCATAAATTCCATGTGCTACGAGGCTCAAGCAAGGCTAGCCAATCCTGTTCATGGTTGTGTCTCCACCATTTCTGCTTTACAACAACAGGTGGCGATGTTGCAAGGAGAACTTGTTGTGGTTCAAAATCAATTGATTAACACAAAAAATTTATATGAAAGTCTTCTTCAGAGAACATATCAATACCAACAACAACCAAACATCAATGTAGTTATGCAACCTACACAGTCCAACAATTTGACTCCTTCTACCAATAGTTTGATGAACAGGAGCTTCTTTAACCCTGGTTTTGATAATCTTGCAATGCAGACAACACCTTCAACAAACAACATGGAGCCTCGTCAGTTTTGTGGGCTTCCCCATTTCAACAATGACATAACGCATCTATTTCCATGA 672 0.4196 MTNPAQENVNEGTSSRANKQKGKVSKRVRSRASSPPCAACKKMRKKCSSDCIFAPYFGSSQGSARFEAVHKVFGANNLSKLLLEVEVAHRNEVINSMCYEAQARLANPVHGCVSTISALQQQVAMLQGELVVVQNQLINTKNLYESLLQRTYQYQQQPNINVVMQPTQSNNLTPSTNSLMNRSFFNPGFDNLAMQTTPSTNNMEPRQFCGLPHFNNDITHLFP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1196 223 MobiDBLite consensus disorder prediction 1 19 - -
Pvu1g1196 223 ProSiteProfiles LOB domain profile. 35 137 IPR004883 -
Pvu1g1196 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 8 195 - -
Pvu1g1196 223 Coils Coil 116 136 - -
Pvu1g1196 223 Pfam Lateral organ boundaries (LOB) domain 36 134 IPR004883 -
Pvu1g1196 223 MobiDBLite consensus disorder prediction 1 33 - -
Pvu1g1196 223 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1196 Pvu-Chr1 32377803 32381015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1196 36 141 AS2 family AT3G03760 66.038 1.00e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu1g1196 LOB 2.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1196 - - pvu:PHAVU_001G115200g 441.039