Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1182 ATGGACAGGCTCATAAAAGTAGACCCGACAAACACTGTTCCAATAAGGATTGAGGCAGGGCAAAAATGCCACGGCAAAATCACCTTACGCAATGTTATGTACACCATGCCGGTGGCATTCAGGCTTCAACCGTTGATCAAAACGCGTTACACTGTGAAGCCTCAATCTGGAATCATATCCCCATTAGCCACAGTAACCATAGAAATCCTCTACCATCTCCCACAAGCCTCCACTCTCCCTCACTCCTTTCCTCACTCCGAAGACTCCTTCCTCCTCCACAGCGTCGTCGTTCCCGGCGCCACCATCAAAGAACCCTCCTCCATGTTCGAATCCGTCCCCTCCGACTGGTTCACCGCCAAGAAGAAACAAGTCTTCATCGACAGCGGCATCAAGATCATCTTCGTCGGTTCACTCATTCTTGCGCACCTAGTCCACGACGGCTCCATAGATGAAATCAGAGAAGCTCTCGAACACAGCGAAGCTTCATGGAAATCCGTTGACTCCGTTGACTCAAACGGCGACACGCTCCTCCATGTGGCGATTTCCAAAAGCAGACCCGACCTAGTTCAATTACTCCTCGAGTTCAACGCAGACATCGAAGCAAAAGATCGTTCTGGCATGACACCGCTGGAAAAAGCTTGCTCTTTAGGAGAAGAGCTGATCGTTGAGCTTCTCTTAGCTCACAAGGCCACCACAGAGCGAACGGAAACCTCGTCGTCGTTGGGAGCGATTCATTTGTCGGCGAGAGAAGGGCACGTGGAGGTTCTGCGGCTGCTGTTACTCAAAGGCGCGAACGTTGACTCGTTGACCAAAGACGGCGAAACCGCGCTGCACCTTGCAGTGAAGCATGGCGAGAGAGAATTCGTGAGGATGTTGCTGGCGAACGACGCGAGAACCGACGTTCGCGACTCGCGAGAGGGTGACACGTGTCTGCACGTGGCCGCGGGTGTGGGAGACGAGGAGATGGTGAAGCTGTTGCTGAAGAAAGGGGCGAACAAGGAGGTGAGGAACTTCGCGGGTAGGACTGCGTACGACGTGGCGGCGGAGAACGGGCATGCAGGCGTGTTCGACGCGCTTGGGCTGGGGGACGGGCTGTGCGCGGCGGCGAGGAGGGGGGAGGTGAGGAGCATCCAGCGGCTGATCGAGGGCGGCGCGGTGGTGAACGGAAGGGACCAACACGGGTGGACGGCGCTGCACAGGGCGTGTTTCAAGGGGAGGGTGGAGGCTGTTAGGGTTTTGTTGGAGAGAGGGAGCGAGGTGGACGCGAGGGATGAGGAGGGGTACAGTGCGCTGCACTGCGCGGTGGAGTCGGGGCATGCTGACGTGGCGGAGGTGCTGGTGAAGAAGGGGGCGGATGTTGAGGCGAGGACTAACAAGGGCGTGACGGCGGTGCAGATGGCGGAGGCGTTGGGTTACGTTGGGATAACGAGGGTGCTGGAGAGCATGGGACACGTGGCTGAGGGAGAACAGCATGGGAAGGTGAAGAGGAAAAAGAAGAAGATGGGAAAAGCGAGGGAGAGAGAGATTCGTGGGAGCTTTGATCGGTCAATGCCTTTGGCTGTGCTCTGA 1569 0.5679 MDRLIKVDPTNTVPIRIEAGQKCHGKITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATVTIEILYHLPQASTLPHSFPHSEDSFLLHSVVVPGATIKEPSSMFESVPSDWFTAKKKQVFIDSGIKIIFVGSLILAHLVHDGSIDEIREALEHSEASWKSVDSVDSNGDTLLHVAISKSRPDLVQLLLEFNADIEAKDRSGMTPLEKACSLGEELIVELLLAHKATTERTETSSSLGAIHLSAREGHVEVLRLLLLKGANVDSLTKDGETALHLAVKHGEREFVRMLLANDARTDVRDSREGDTCLHVAAGVGDEEMVKLLLKKGANKEVRNFAGRTAYDVAAENGHAGVFDALGLGDGLCAAARRGEVRSIQRLIEGGAVVNGRDQHGWTALHRACFKGRVEAVRVLLERGSEVDARDEEGYSALHCAVESGHADVAEVLVKKGADVEARTNKGVTAVQMAEALGYVGITRVLESMGHVAEGEQHGKVKRKKKKMGKAREREIRGSFDRSMPLAVL* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1182 522 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat profile. 426 458 IPR002110 GO:0005515
Pvu1g1182 522 SMART ANK_2a 393 422 IPR002110 GO:0005515
Pvu1g1182 522 SMART ANK_2a 239 268 IPR002110 GO:0005515
Pvu1g1182 522 SMART ANK_2a 172 201 IPR002110 GO:0005515
Pvu1g1182 522 SMART ANK_2a 272 303 IPR002110 GO:0005515
Pvu1g1182 522 SMART ANK_2a 306 335 IPR002110 GO:0005515
Pvu1g1182 522 SMART ANK_2a 426 455 IPR002110 GO:0005515
Pvu1g1182 522 SMART ANK_2a 339 368 IPR002110 GO:0005515
Pvu1g1182 522 SMART ANK_2a 205 234 IPR002110 GO:0005515
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat profile. 306 338 IPR002110 GO:0005515
Pvu1g1182 522 Gene3D - 311 360 IPR036770 -
Pvu1g1182 522 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 522 - -
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Pvu1g1182 522 SUPERFAMILY Ankyrin repeat 165 481 IPR036770 -
Pvu1g1182 522 MobiDBLite consensus disorder prediction 487 522 - -
Pvu1g1182 522 PRINTS Ankyrin repeat signature 273 288 IPR002110 GO:0005515
Pvu1g1182 522 PRINTS Ankyrin repeat signature 442 456 IPR002110 GO:0005515
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat region circular profile. 393 425 - -
Pvu1g1182 522 SUPERFAMILY PapD-like 2 149 IPR008962 -
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat region circular profile. 272 303 - -
Pvu1g1182 522 Gene3D - 361 504 IPR036770 -
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat region circular profile. 306 337 - -
Pvu1g1182 522 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 522 - -
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat region circular profile. 172 204 - -
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat region circular profile. 426 458 - -
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat profile. 239 271 IPR002110 GO:0005515
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat region circular profile. 239 267 - -
Pvu1g1182 522 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Pvu1g1182 522 Gene3D - 238 310 IPR036770 -
Pvu1g1182 522 Gene3D Immunoglobulins 1 124 IPR013783 -
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat profile. 393 425 IPR002110 GO:0005515
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Pvu1g1182 522 ProSiteProfiles Ankyrin repeat profile. 272 304 IPR002110 GO:0005515
Pvu1g1182 522 Pfam Ankyrin repeats (3 copies) 164 230 IPR002110 GO:0005515
Pvu1g1182 522 Pfam Ankyrin repeats (3 copies) 366 456 IPR002110 GO:0005515
Pvu1g1182 522 Pfam Ankyrin repeats (3 copies) 244 337 IPR002110 GO:0005515
Pvu1g1182 522 Gene3D - 135 237 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1182 Pvu-Chr1 31938316 31939884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1182 246 470 Miscellaneous Gene Families AT3G12360 28.980 7.11e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1182 - - gmx:100782232 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1182 1 31938316 31939884 Pvu4g0554 4 6254322 6256456 PCT