Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1172 ATGACAGTAACCTACGAAGCCTGTTACACCGTGAAGCCTATGGAGCCAACAAAGTGTGGACGTGTACCCCTATCTGAATGGGATCAAATAGGTACCATAACTCACGTTCCCACAATCTACTTCTATCGTCTCTCACAAAACTTCCATCTCTTCCCAAACAACACCATTGCTTCCAACTTGAAGGACTCATTAAGCCGAGTCCTTGTGCCGTTTTATCCTCTAGCTGGTCGTTTACGCTGGATAAGCAATGGTCGTTTAGAGCTTGATTGCAATGCCATGGGGGTTCAGTTCGTTGAAGCTCAGTCCTCATCAAGTTTAGAAGATCTGGGTGACTTTTCACCCTCTTCAGAACACCACTATCTTTTTCCCAAAGTAGACTACACTCTCCCAATTCACGAGTTGCCCTTGGTTCTGGCTCAGTTAACTAAGTTCAAGTGTGGTGGCATCAGCATCAGCATGACAATTTCTCATGCCGTTGCTGATGGACCAAGTGCCCTGCACTTCACTCGCGAGTGGGCGAGGCTTGCACGCGGCGAAACTCTGGAAAAGGTGCCGTTTCTTGACTGGAAAGTGTTTCGTGCTGGGGAGCCTCCTTCGGTGCCGCTAACAAAGTGTCACGTTCACACGGAGTTCAATCACCCTCCGTTGTTGCTGGGGCAAACGAATAACTCAGAGGAAAGGAAGAAGAAAACCACAGTGGCTATTCTGAAACTGAGCAAATTCCAAGTTGAGACCCTGAGAAAGACAGCGAATGAGAGTTGGAATAGACCTAGGAACGGTCGGGCTTACAGTCGTTACGAGAGTGTAACTGGTCACGTGTGGAGAAGTGCATGCAAGGCAAGAGGGCACAAAGAGGAGCAACCAACCGCGGTTGGTATTTGCGTTGACTCGAGGAGTCGCATGGAACCTCCTTTGCCAAAAGAGTATTTTGGAAATGCCACTTTGGATGTGATTGCTTCTAGCCTGGCGGGTGATTTGATGTCAAAGCCTTTGGGGTATGCGTCGAGTAGAATAAGAGAGGCCATTGAGAGGGTGAATGATGAGTACGTGAGGTCGGGGGTTGAGTTCTTGAAGAATCAGGAAGACTTGAGTAGGTTTCAGGATCTTTATGCAGTAGGAAGTGAGAAAGGGCCTTTCTATGGGAACCCTAATCTTGGTGTGGTTAGTTGGTTGACTTTGCCCATCTATGGGGTTGATTTTGGGTGGGGGAAGGAGGTTTATATGGGTCCAGGCACACATGACTTTGATGGAGATTCTTTGCTTCTTCCTGGTCCTGATGGGGATGATGGATCTTTGTTGCTTGCTTTATGTTTGCAAGTGGTGCATATGGATGCGTTTAAGAAGCATTTTTATGAGGACATTGAGTAA 1368 0.4751 MTVTYEACYTVKPMEPTKCGRVPLSEWDQIGTITHVPTIYFYRLSQNFHLFPNNTIASNLKDSLSRVLVPFYPLAGRLRWISNGRLELDCNAMGVQFVEAQSSSSLEDLGDFSPSSEHHYLFPKVDYTLPIHELPLVLAQLTKFKCGGISISMTISHAVADGPSALHFTREWARLARGETLEKVPFLDWKVFRAGEPPSVPLTKCHVHTEFNHPPLLLGQTNNSEERKKKTTVAILKLSKFQVETLRKTANESWNRPRNGRAYSRYESVTGHVWRSACKARGHKEEQPTAVGICVDSRSRMEPPLPKEYFGNATLDVIASSLAGDLMSKPLGYASSRIREAIERVNDEYVRSGVEFLKNQEDLSRFQDLYAVGSEKGPFYGNPNLGVVSWLTLPIYGVDFGWGKEVYMGPGTHDFDGDSLLLPGPDGDDGSLLLALCLQVVHMDAFKKHFYEDIE* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1172 455 Pfam Transferase family 1 452 - -
Pvu1g1172 455 Gene3D - 1 212 IPR023213 -
Pvu1g1172 455 Gene3D - 219 453 IPR023213 -
Pvu1g1172 455 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 5 454 - -
Pvu1g1172 455 SUPERFAMILY CoA-dependent acyltransferases 59 187 - -
Pvu1g1172 455 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 5 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1172 Pvu-Chr1 31608609 31609976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1172 1 452 Monolignol Biosynthesis Gene Families AT5G48930 39.602 7.67e-111 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1172 K13065 - gmx:100777007 705.286