Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1161 ATGGAGATTCAATTCCAACAACCAAACCTGCAGCATCAGAAATCAGGCATTGCAATCACCAAAGGTGGAAAGTTGAAAGGGAGAAGCAGAAGCAACAACACCAACAAATTTGTTGGGGTGAGACAAAGGCCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCTGAGGAAGCAGCCAGAGCCTATGATGAAGCTGCATGCCTTCTTCGCGGATCCAACACTCGCACCAACTTCATCACTCATGTGTCCTTGGATTCCCCTCTTGCTTCTCGAATTCGGAATCTTCTTAACAACAAAAAAGGAATGAAAAAACAGGAAGATGCTAATGCTAATAATGCACCAGCTCCAAGAGTAAGCAGCACTAGCACTGCTAGTACTAGTATTAGTACTACTACTAGTGCTATTAGTAATTCAAACAATGGCAATGGCAACAATGACAAGTCTCTTTCTACCGTGACACCTCAAAGTTCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGACTTTGGGTCAGGTCAACAATCCAATGCTTCATGGGGTTTTGGAGCTGTCTTTGATCGTTTTCCTATCGCTCAAATATTGGATGTACCAAAGATTGATGATTGCCTCACTGATACAGCTGACTTGGAGCTTTCTGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAGTGAAACTCTCTGGGATCTTCCTCCTTTATGCTCATTGTTCTGCTAA 837 0.4229 MEIQFQQPNLQHQKSGIAITKGGKLKGRSRSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGMKKQEDANANNAPAPRVSSTSTASTSISTTTSAISNSNNGNGNNDKSLSTVTPQSSNLFDDAYKPDLSNCREDFGSGQQSNASWGFGAVFDRFPIAQILDVPKIDDCLTDTADLELSEFERMKVERQISASLYAINGVQEYMETVQDSSETLWDLPPLCSLFC* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1161 278 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Pvu1g1161 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 13 265 - -
Pvu1g1161 278 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Pvu1g1161 278 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 265 - -
Pvu1g1161 278 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Pvu1g1161 278 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Pvu1g1161 278 MobiDBLite consensus disorder prediction 126 172 - -
Pvu1g1161 278 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Pvu1g1161 278 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Pvu1g1161 278 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Pvu1g1161 278 MobiDBLite consensus disorder prediction 116 172 - -
Pvu1g1161 278 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1161 Pvu-Chr1 30786425 30787261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1161 10 278 AP2-EREBP Transcription Factor Family AT5G19790 42.806 5.87e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu1g1161 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1161 K09286 - gmx:100796898 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1161 1 30786425 30787261 Pvu1g1161 1 30786425 30787261 ECH
Pvu1g1161 1 30786425 30787261 Pvu4g0868 4 14013830 14015119 PCT