Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1137 ATGAACATGAATATGTGCCAAAATGTATCAGTTTCCTCTGAATGCCACCAAGAGCAGGTCTTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGAGTTGGAGTGGCTTTCAGAGTTTGTTGAAGACTGCTTTTCAAGTCCCCCAAGCTTTGTATTGGGAGCTTCCGGGGTTAAGACTACAATCACAAGCACCGACCCTTCTTCAGGTACATTGAAGAGAGCCCAACAACATGAGTCTCCTTTGCAAAATTTTGCTGTGCCTGGGAAGGCGAGGAGCAAAAGGAAAAGGCTTTCAGCCCCTAGAACCAAGGACCCTTTAAGCATATGGTCACACCATTTGAACCCCCAAAATGAAGCCTTGAGTTCTGACCCTCCTCTGCTCAAACAGGCTTATTGGTTGGCTGACAGTGAACTCATTATGCCTAAGCCAAAGGAGGAGCAAGAAGTGAGCAAAGTGGATGGGGAAGTGGTGGAGAAGGGAGTAGTGATTATTAGGAAGGAAAGCTTTGGGGACTCTGAGCTTGAAGGTAGCAACGGTCAACAACCAATGCCAAGGAGGTGCACCCATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACACTTTGCAATGCATGTGGAGTTAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGGCCAGCCAAGAGTCCCACTTTTGTAAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGTCTGTTTACTCTTCCATTTCTAGTGAGCAGTAG 816 0.4792 MNMNMCQNVSVSSECHQEQVFAPSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPPSFVLGASGVKTTITSTDPSSGTLKRAQQHESPLQNFAVPGKARSKRKRLSAPRTKDPLSIWSHHLNPQNEALSSDPPLLKQAYWLADSELIMPKPKEEQEVSKVDGEVVEKGVVIIRKESFGDSELEGSNGQQPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSVYSSISSEQ* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1137 271 MobiDBLite consensus disorder prediction 98 120 - -
Pvu1g1137 271 Gene3D - 188 260 IPR013088 GO:0006355|GO:0008270
Pvu1g1137 271 Pfam GATA zinc finger 198 232 IPR000679 GO:0006355|GO:0043565
Pvu1g1137 271 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 271 - -
Pvu1g1137 271 ProSiteProfiles GATA-type zinc finger domain profile. 192 228 IPR000679 GO:0006355|GO:0043565
Pvu1g1137 271 SMART GATA_3 192 246 IPR000679 GO:0006355|GO:0043565
Pvu1g1137 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 256 - -
Pvu1g1137 271 CDD ZnF_GATA 197 244 IPR000679 GO:0006355|GO:0043565
Pvu1g1137 271 PANTHER GATA TRANSCRIPTION FACTOR 3 271 - -
Pvu1g1137 271 ProSitePatterns GATA-type zinc finger domain. 198 223 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1137 Pvu-Chr1 29814190 29815597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1137 42 260 C2C2-Gata Transcription Factor Family AT4G32890 40.444 3.23e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu1g1137 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1137 - - gmx:100786479 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1137 1 29814190 29815597 Pvu1g1137 1 29814190 29815597 ECH
Pvu1g1137 1 29814190 29815597 Pvu4g0848 4 13455949 13457622 PCT