Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1123 ATGCCACCAAAGTTTGATCCCTCGCAGGTGCTGGACGTGATCGTTCGCGTCACCGGTGGTGAGGTGGGCACTGCGAGTTCTCTCGCACCAAAGATCGGTCCGAGACTGGACTGGAAGGGCCTCCATATGACGATGAAGCTCACCATTCATAACCACCAGGCGAAGGTGACAGTGGTGCGCTCCGCCGCCGCACTTGTCATCAATGCACTCAAAGAGCCTGAGAGGGACAGGAAAAAGAACAAGAATGTAAAGCACAATGGAAAGATCGCCCTAGACGACGTGATTGAGATCGCGAGGGTGATGAGGTCGCACTCCATGGAGAAGGATCTCAGCAGAAGCATCAAAGAGATCCTCAGGACTTGTGTATCTGTTGGGTGCACCGTCGATGGGAAAGACCCCAAGGATCTGCAACAGGAGATTTCCGATGGCGACATAGAGGTTCCTCTTAAATGA 453 0.532 MPPKFDPSQVLDVIVRVTGGEVGTASSLAPKIGPRLDWKGLHMTMKLTIHNHQAKVTVVRSAAALVINALKEPERDRKKNKNVKHNGKIALDDVIEIARVMRSHSMEKDLSRSIKEILRTCVSVGCTVDGKDPKDLQQEISDGDIEVPLK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1123 150 Pfam Ribosomal protein L11, RNA binding domain 62 128 IPR020783 GO:0003735|GO:0005840|GO:0006412
Pvu1g1123 150 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 149 - -
Pvu1g1123 150 Gene3D - 66 148 IPR036769 -
Pvu1g1123 150 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 71 IPR036796 -
Pvu1g1123 150 PANTHER 60S RIBOSOMAL PROTEIN L12 1 149 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu1g1123 150 SUPERFAMILY Ribosomal protein L11, C-terminal domain 62 133 IPR036769 -
Pvu1g1123 150 Gene3D - 36 65 IPR036796 -
Pvu1g1123 150 Gene3D - 1 35 IPR036796 -
Pvu1g1123 150 SMART rl11c 13 129 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1123 Pvu-Chr1 28029408 28029903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1123 1 148 Cytoplasmic Ribosomal Protein Gene Family AT3G53430 67.683 1.64e-76 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1123 K02870 - gmx:100527860 240.35