Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1109 ATGGGTTCTTCTTCATGGTGCTTCAATAATGTTGTTGGTGAAGGTTTCAATGGAGTCATGAGTTTCATCCCTTCTTCTTTTCACGTGGGTTCACAAGCTCCGCCCTTGGGTCACGACAAGGGGTTTTTGGGTCCAAACCTTGAGATGAGTCTTCAGATGTTGTGCCCTTCAGTGGTTCAGCCGCAGGAGAGCAGGGAGAAAAAGAGAACCAGTGATGAAGGGGTTGCAAACAAGAAGTTCTCTTTGAAACGCGGGGAAGAAGAAGAAGCTAACGGCTTCATTTCAGGGAAAAAGGGGTTCACCAAGCTTTGTGCCAGAGGCCACTGGAGGCCAGCAGAAGATGACAAACTTAAGGAGCTTGTGGCTCAATATGGTCCCCAAAACTGGAACTTGATTGCTGAACATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTTTAATCAGTTAGATCCTAAGATCAACAAAAAGTGTTTCTGTGAGGAGGAAGAGGAAAGGCTTTTGACTGCTCATAAAATGTATGGTAGCAAATGGGCCATGATTGCTAGGCTATTTCCTGGAAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATAATGTCTAGGAGGCAGAGGGAGCAGTCTAGTGGCGTGTATAGAAGGAGAAAACCTCATATCAATGAATCTTTTTTGAAGGGTTTGAATCTGACACTGTCTAACAATGCTACTAGTGACGAGTCAACCATCTCAAACACCATTGATGAATCTGCCTCAACATGCACCAATCTCTCCCTAACTCCCTCTTCAGCCAAGTTGAATCCTCCTTTTGGACTCTTACACCAACCAGGAGAATCTAGAGAGGATGTGTGGTTGAACAAGTATTTTGGTGGTTGGAACGGGTCAGAAGCTGTGGGAAAAAGGCTAATGGGTGTGGACCAGGCTAGTTTTTCAGATACAAACTCAGAAGTATCGGTATCTGAGTCAGTTATCACCAATAGGTCCAATCTCTCAATTTCTGAAGAGAAAGAGGGTGAAACTATGGGTGATAAGATTAACATGTCATTCATTGATTTTATTGGAGTAGGAACTACTTAG 1083 0.4367 MGSSSWCFNNVVGEGFNGVMSFIPSSFHVGSQAPPLGHDKGFLGPNLEMSLQMLCPSVVQPQESREKKRTSDEGVANKKFSLKRGEEEEANGFISGKKGFTKLCARGHWRPAEDDKLKELVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPKINKKCFCEEEEERLLTAHKMYGSKWAMIARLFPGRTDNAVKNHWHVIMSRRQREQSSGVYRRRKPHINESFLKGLNLTLSNNATSDESTISNTIDESASTCTNLSLTPSSAKLNPPFGLLHQPGESREDVWLNKYFGGWNGSEAVGKRLMGVDQASFSDTNSEVSVSESVITNRSNLSISEEKEGETMGDKINMSFIDFIGVGTT* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1109 360 Gene3D - 161 221 - -
Pvu1g1109 360 SMART sant 157 205 IPR001005 -
Pvu1g1109 360 SMART sant 105 154 IPR001005 -
Pvu1g1109 360 MobiDBLite consensus disorder prediction 62 79 - -
Pvu1g1109 360 CDD SANT 109 150 IPR001005 -
Pvu1g1109 360 Gene3D - 106 157 - -
Pvu1g1109 360 Pfam Myb-like DNA-binding domain 160 201 IPR001005 -
Pvu1g1109 360 Pfam Myb-like DNA-binding domain 106 152 IPR001005 -
Pvu1g1109 360 ProSiteProfiles Myb-like domain profile. 106 152 IPR001005 -
Pvu1g1109 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 156 IPR017930 -
Pvu1g1109 360 MobiDBLite consensus disorder prediction 60 79 - -
Pvu1g1109 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 207 IPR017930 -
Pvu1g1109 360 PANTHER OS08G0435700 PROTEIN 60 360 - -
Pvu1g1109 360 SUPERFAMILY Homeodomain-like 106 199 IPR009057 -
Pvu1g1109 360 CDD SANT 169 200 IPR001005 -
Pvu1g1109 360 ProSiteProfiles Myb-like domain profile. 153 203 IPR001005 -
Pvu1g1109 360 PANTHER MYB PROTEIN-RELATED 60 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1109 Pvu-Chr1 27428707 27431327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1109 83 360 MYB Transcription Factor Family AT5G17800 44.912 2.55e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g1109 Myb_DNA-binding 9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1109 K09422 - gmx:100791795 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1109 1 27428707 27431327 Pvu1g1109 1 27428707 27431327 ECH
Pvu1g1109 1 27428707 27431327 Pvu4g0578 4 6865813 6867929 PCT