Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1108 ATGGAAGATGAGAGGCAGAAAGAGGCAAAGAGTCCAAGGCATGGCCCCGAGAAGAGTGAAGCGGTTCGGTCAAGGTGGACTCCGAAGCCGGAACAAATTCTCATACTCGAATCCATCTTCAACAGTGGCATGGTCAATCCTCCAAAAGATGAAACCGTCAGAATAAGAAAACTGCTTGAGAAATTCGGCACTGTGGGTGACGCCAACGTCTTCTACTGGTTCCAGAACCGACGCTCCAGATCCCGCCGCCGCCAGCGCCAGATGATGCAGCAGCAAGCAGCCGCCACCGCTGCTGCGGTTAACCAGCCTCAGCCACAGCCACAGCCTCAGCCTCAGCCTCATGGTCTTGTTGGTGGTGGTGCAATTCAGCATGATCATCATAATCAGGTCAACCTTGTTGCAAGTGAAAGTGCTACTTCAAACATGGGTCTTGGTTCTTGTGTTTCTTATGATCTCCTAGGTGGTTCCTCTTCTTCATCATGTAGTGGTGGTGGACAACAAGGCATGGCTGGTTTCTTTTCTGCTTCTTCTCCTCAAGTGGGTTTTCCTGAAATTATTGACCATACCTCACCTGCATCATCACTTTTGTTCCCTCCTTTTGATCCAAATTTGAGCTTCCAGACTGGATATGGGGGCACCAATATTTCAGCATTCATCACAGTCTTTATCAATGGGATTGCAACAGAACTTCCAAAGGGACCAATAGACATCAAGACAGTGTTTGGAGAAGATGTTATGTTACTTCATTCCTCTGGAGTGCCAATTCTCACCAATGAATTTGGATTCTTGATGCAGAACCTTCAGCATGGAGAAAGCTACTTTCTGGTATCAAAGCCAACATAA 843 0.4745 MEDERQKEAKSPRHGPEKSEAVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQMMQQQAAATAAAVNQPQPQPQPQPQPHGLVGGGAIQHDHHNQVNLVASESATSNMGLGSCVSYDLLGGSSSSSCSGGGQQGMAGFFSASSPQVGFPEIIDHTSPASSLLFPPFDPNLSFQTGYGGTNISAFITVFINGIATELPKGPIDIKTVFGEDVMLLHSSGVPILTNEFGFLMQNLQHGESYFLVSKPT* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1108 280 SUPERFAMILY Homeodomain-like 17 90 IPR009057 -
Pvu1g1108 280 MobiDBLite consensus disorder prediction 1 25 - -
Pvu1g1108 280 MobiDBLite consensus disorder prediction 86 103 - -
Pvu1g1108 280 MobiDBLite consensus disorder prediction 1 26 - -
Pvu1g1108 280 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Pvu1g1108 280 Gene3D - 23 90 - -
Pvu1g1108 280 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Pvu1g1108 280 SMART HOX_1 21 88 IPR001356 GO:0003677
Pvu1g1108 280 MobiDBLite consensus disorder prediction 79 122 - -
Pvu1g1108 280 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 279 IPR044558 GO:0003700|GO:0048830
Pvu1g1108 280 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1108 Pvu-Chr1 27360508 27362916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1108 19 280 Wox Gene Family AT5G17810 45.552 8.03e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pvu1g1108 Homeodomain 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1108 - - gmx:100818735 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1108 1 27360508 27362916 Pvu1g1108 1 27360508 27362916 ECH
Pvu1g1108 1 27360508 27362916 Pvu4g0579 4 6893406 6895776 PCT