Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1101 ATGCTTTCGGGGGCTAGTGTTGAGAATGAGGCCACTGAAGATGGTAAATATGATGATTCACATGGAGAAGATGAATCAGAAACTTTGTCTGATATTGATGATTCTGATGTTGATGTGTATCTTCACAATGAGGAGGAAAAGCAGATCAAGAAGATGCTGTGGGAAAGAGTTAACCGAGTGTATGTTACGGAACAGGAAGCCAAGGAAGCAGTTGCAGCAGCTAATAAGAAAGCTTTTGAGGGAAATTTTGGAAACTGTTCAGAGGATTTACTAGCTGCAAGAGAGCTTGCTGCATCTTCTGCTGAAGCCGTGGCAAAATCTAGAAAGGGAATGAAACATAGACGGGCCCGTGAAGCAAAAAATATTGCGCCAACTCAATATGCTGCAGAGGCCATTGGCCAAATGTCAAATGAAAGAAAGAGTCTCAAATCTAAAGTCAATTTGGATCGCCTGGAAGAATTATTTAATGATATGGAGGAGGATGAGGCGTAA 492 0.4167 MLSGASVENEATEDGKYDDSHGEDESETLSDIDDSDVDVYLHNEEEKQIKKMLWERVNRVYVTEQEAKEAVAAANKKAFEGNFGNCSEDLLAARELAASSAEAVAKSRKGMKHRRAREAKNIAPTQYAAEAIGQMSNERKSLKSKVNLDRLEELFNDMEEDEA* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1101 163 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 12 155 IPR029529 GO:0000126|GO:0000995|GO:0006383
Pvu1g1101 163 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 12 155 IPR000812 GO:0006352|GO:0070897
Pvu1g1101 163 Coils Coil 148 163 - -
Pvu1g1101 163 Gene3D Single helix bin 23 72 - -
Pvu1g1101 163 Pfam Brf1-like TBP-binding domain 30 156 IPR011665 -
Pvu1g1101 163 MobiDBLite consensus disorder prediction 1 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1101 Pvu-Chr1 26908266 26916498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1101 30 140 Inorganic Solute Cotransporters AT2G01280 41.441 3.16e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1101 K15196 - vra:106753841 231.106