Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1088 ATGGCAGAAGAGGATCCAAAACCTCTGAATTACATCCCCGAGGTTATACTGAAGAAGCGGAAAAGCAGGGAAGCATGGGCATTGAGAAAGAAAGAGCAATTCCAGCACAAGAGTTTTCAGTCCATCAAGAAGCCCGAGGATTTCATTCATGAGTATCGCAACCAGGAAGTGGACCTCCTTAGGATGAAACGGAGGGTGAAGAGGAAAGTTCCTCATGCTAACTCCAACGTATTGATAATCATTCGCATACAGGGGAAAAAGGACATGCATCCAAGGACAAGGAAGGTGTTATACAGCTTGGGTTTGAGGAGTATGTTCAGTGCTGTTTTTGTGAAGCCAAGTGAGGGAATAATGGCCAAGCTGCAGAGGGTGGAACCATTTGTGACCTATGGATATCCAAACCTTAAAAACATAAAGGAGCTGATTTACAAGAAAGGACTTGCAAGGATGGATGGGCGGAAAGTTCCCTTGACAGATAATAACATTATTGATCAGGAATTAGGAAAGTTTGGTGTTGTCTGTCTAGAGGACATGGTGCATCAGATATATAATGCCGGTCCCCACTTTAAGGAAGTTGTCAAATTTATGTGGCCCTTTGTGCTCAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCCTATACAAGGAGGGTGGAGACACAGGGAACCGTGAGGATCTCATCAACGAACTAATCGATAAAATGAATTAG 711 0.436 MAEEDPKPLNYIPEVILKKRKSREAWALRKKEQFQHKSFQSIKKPEDFIHEYRNQEVDLLRMKRRVKRKVPHANSNVLIIIRIQGKKDMHPRTRKVLYSLGLRSMFSAVFVKPSEGIMAKLQRVEPFVTYGYPNLKNIKELIYKKGLARMDGRKVPLTDNNIIDQELGKFGVVCLEDMVHQIYNAGPHFKEVVKFMWPFVLNKPAEGLKGSKTLYKEGGDTGNREDLINELIDKMN* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1088 236 Coils Coil 232 236 - -
Pvu1g1088 236 CDD Ribosomal_L7_archeal_euk 77 236 IPR035808 -
Pvu1g1088 236 SUPERFAMILY Ribosomal protein L30p/L7e 78 236 IPR036919 -
Pvu1g1088 236 Gene3D - 77 236 IPR036919 -
Pvu1g1088 236 TIGRFAM uL30_euk: 60S ribosomal protein uL30 16 236 IPR005998 GO:0000463|GO:0003735|GO:0022625
Pvu1g1088 236 Pfam Ribosomal protein L30p/L7e 78 128 IPR016082 -
Pvu1g1088 236 PANTHER 60S RIBOSOMAL PROTEIN L7-1 3 236 - -
Pvu1g1088 236 PANTHER 60S RIBOSOMAL PROTEIN L7 3 236 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1088 Pvu-Chr1 26480468 26482910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1088 1 236 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 51.822 3.57e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1088 K02937 - gmx:100500005 426.402