Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1083 ATGAACAACTCAGGGAGTTCAGAATCAGTGATAGAGATGGTAAAGGGTTCACATGAGTTCAAGGTAAAGGGATATTCTCTGGTGAAGGGAATTGGAGTGGGAAAATTTATTGCAAGTGAGACGTTCAATGTTGGAGGGTATGAATGGGCCATATACTTTTACCCAGATGGTATAGACACCCAAGAAAACGCCGCGGTTTATGTCTCGGTTTTCGTTGTGCTTGTTTCCAATGCAAATGATGTTCGTGCTAAGTTTGAATTGGTCATGCATGACCAAAGTGGGGACGATGAACACTTCGTCCTCGGTCACTTTAATGGCACCCTAGGGACTGACCCTTACACTCTATCAACAGGAGAAATGTGGGGGATTAGGCCTTTTTACAAAAGTTTTCACCTTGAACACTCAACGTATCTCATAGATGATTGTCTACAAGTAAATTGCACTGTTGGGGTTTTGCCCACCACCCTAGATAATTCTATGATAATAGAGGTTCCTGAGTCTAGCATTGCAGTACATTTTGGGATGTTGTTTGAAGATGAACAATCATCTGATGTTACTTTTTGTGTTGGAGGAAACAAATTTTATGCACATAAGATTGTATTGGCAGCTAGATCAAGTGTGTTTAAAGATCAGTTTTTCAATGAAACTGAGAAGGTTGATAGAGAGATACTTGTTAATGACATGGAACCTAAGGTTCTCAAGGCATTACTTCACTTTATTTATAAAGACACTCTTATAGAAGATGAAGAACTCCATTTCTCAGTGCCTTCAACCATGACTTCTCTGTCAAAGTTGTATGTGACAAAGTTGCTGGCTGCTGCACACAAGTACCAATTACCAAGGCTAAAGTTGATGTGCGAATCTGTACTTTGCAAACATATATCTATAAATTCTGTTGCTCAAATTCTTATCATTTCTGATTGCTATGATGCCATCCAATTGAAGTCCATATGTCTGCGATTCTCAACAGAAAATCTTGAGGCTGTACTGAAATCTCATGGTTTCAAGCATCTTAAGAAAAAATGTCCACTACTTCAATATGAACTGTTAAAGACTGTGGCAAAAGAAATTGAGTGTGTCAAATCTTCTCATGTTGACAGTGATGAAACACATGAGCCAAATGAAATAGAAGCTGAAAGCACA 1143 0.3876 MNNSGSSESVIEMVKGSHEFKVKGYSLVKGIGVGKFIASETFNVGGYEWAIYFYPDGIDTQENAAVYVSVFVVLVSNANDVRAKFELVMHDQSGDDEHFVLGHFNGTLGTDPYTLSTGEMWGIRPFYKSFHLEHSTYLIDDCLQVNCTVGVLPTTLDNSMIIEVPESSIAVHFGMLFEDEQSSDVTFCVGGNKFYAHKIVLAARSSVFKDQFFNETEKVDREILVNDMEPKVLKALLHFIYKDTLIEDEELHFSVPSTMTSLSKLYVTKLLAAAHKYQLPRLKLMCESVLCKHISINSVAQILIISDCYDAIQLKSICLRFSTENLEAVLKSHGFKHLKKKCPLLQYELLKTVAKEIECVKSSHVDSDETHEPNEIEAEST 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1083 381 CDD MATH 16 149 IPR002083 GO:0005515
Pvu1g1083 381 Gene3D - 294 364 - -
Pvu1g1083 381 Gene3D Potassium Channel Kv1.1; Chain A 158 288 IPR011333 -
Pvu1g1083 381 CDD BTB_POZ_BPM_plant 169 291 - -
Pvu1g1083 381 ProSiteProfiles MATH/TRAF domain profile. 15 149 IPR002083 GO:0005515
Pvu1g1083 381 SUPERFAMILY TRAF domain-like 13 155 - -
Pvu1g1083 381 ProSiteProfiles BTB domain profile. 183 249 IPR000210 GO:0005515
Pvu1g1083 381 SUPERFAMILY POZ domain 160 294 IPR011333 -
Pvu1g1083 381 SMART BTB_4 183 294 IPR000210 GO:0005515
Pvu1g1083 381 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 13 152 IPR008974 GO:0005515
Pvu1g1083 381 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 4 364 - -
Pvu1g1083 381 Pfam BTB/POZ domain 175 293 IPR000210 GO:0005515
Pvu1g1083 381 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 4 364 IPR045005 GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1083 Pvu-Chr1 26322259 26323629 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pvu1g1083 BTB 1.4e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1083 K10523 - gmx:100809683 423.705