Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1079 ATGCCACCGAAGTTTGATCCCTCGCAGGTGGTGGACGTGATCGTTCGCGTCACCGGTGGTGAGGTGGGCACTGCGAGTTCTCTCACACCAAAGATCGGTCCGTTGGGACACTCTCCAAAGAAGATCGATGAAGACATCGCCAAGGAGACTAGACTGGAAGGGCCTCCGTATGACGATGAAGCTCACCGTTCAGAACCACCAGGCGAAGGAAAAAAGAACAAGAATGTAAAGCACAATGGAAACATCGCCCTAGACGACGTCATTGAGATCATGAGGGTGATGAGGTCGCACTCCATGGCGAAGGATCTCAGCAGAAGCATCAAAGAGATCCTCAGGACTTGTGTGTCTGTTGGGTGCACCGTCTATGGGAAAGACCCCAAGGATCTGCAACAGGAGATTTTCGATGGCGACATTGAGGTTCCTCTTAAATGA 432 0.5162 MPPKFDPSQVVDVIVRVTGGEVGTASSLTPKIGPLGHSPKKIDEDIAKETRLEGPPYDDEAHRSEPPGEGKKNKNVKHNGNIALDDVIEIMRVMRSHSMAKDLSRSIKEILRTCVSVGCTVYGKDPKDLQQEIFDGDIEVPLK* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1079 143 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 51 IPR036796 -
Pvu1g1079 143 MobiDBLite consensus disorder prediction 23 78 - -
Pvu1g1079 143 Gene3D - 1 54 IPR036796 -
Pvu1g1079 143 PANTHER 60S RIBOSOMAL PROTEIN L12 65 142 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu1g1079 143 PANTHER 60S RIBOSOMAL PROTEIN L12 1 51 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu1g1079 143 SMART rl11c 13 122 IPR000911 GO:0003735|GO:0005840|GO:0006412
Pvu1g1079 143 MobiDBLite consensus disorder prediction 37 78 - -
Pvu1g1079 143 Gene3D - 61 141 IPR036769 -
Pvu1g1079 143 Pfam Ribosomal protein L11, RNA binding domain 67 121 IPR020783 GO:0003735|GO:0005840|GO:0006412
Pvu1g1079 143 SUPERFAMILY Ribosomal protein L11, C-terminal domain 68 126 IPR036769 -
Pvu1g1079 143 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 65 142 - -
Pvu1g1079 143 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1079 Pvu-Chr1 25716050 25716546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1079 1 141 Cytoplasmic Ribosomal Protein Gene Family AT3G53430 58.537 1.03e-57 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1079 K02870 - gmx:100527860 193.741