Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1050 ATGTATCACGCAAAGAAGTTTTCGTCAGCTAGCATGGTGCCCTATAAATCTCAAGGTGGTGCTGAACAACTTGCAAATGTTGAGGTTTTGGGTGGATCTGCTGCCAAAAATGCCACACCTGCTGGAGGAAGTGGGAAGCAGCGTTTAAGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTCCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTACTTACCTGAATCACCAGCTGATGACTCTAAAGATGAGAAGAGAAATTCTGGAGACAGCTTTTCTGGCGCAGATTCTTCACCGGGAATGCCAATCAATGATGCCTTAAGAATGCAGATGGAGGTACAGAAACGTCTTCATGAGCAGCTCGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTACAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACTTTAACAACCTCAGAAACACTTCCTTTGTCGCATGATAAGCACACTCATCCCCACTCGGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCCCTTTGTCTCCACATAAAAAACAGAGAATCGATGATGTCTTCACTGCTTCCCATGTAAGAAAGACTGAACAAAAGAATGACTGCAATGTTGGTCAATTGGATCCAAATTTGTATGATGATACTGGGTTTGGATTTGACTTGGAGACAAAAAAGGATGAACATAAGGAGAGTGGACAGTAA 816 0.4252 MYHAKKFSSASMVPYKSQGGAEQLANVEVLGGSAAKNATPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADDSKDEKRNSGDSFSGADSSPGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSETLPLSHDKHTHPHSEASGSSDALASPLSPHKKQRIDDVFTASHVRKTEQKNDCNVGQLDPNLYDDTGFGFDLETKKDEHKESGQ* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1050 271 Pfam MYB-CC type transfactor, LHEQLE motif 132 178 IPR025756 -
Pvu1g1050 271 MobiDBLite consensus disorder prediction 106 121 - -
Pvu1g1050 271 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Pvu1g1050 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Pvu1g1050 271 MobiDBLite consensus disorder prediction 189 271 - -
Pvu1g1050 271 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Pvu1g1050 271 MobiDBLite consensus disorder prediction 256 271 - -
Pvu1g1050 271 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 264 IPR044848 GO:0003700
Pvu1g1050 271 Coils Coil 135 155 - -
Pvu1g1050 271 PANTHER OS05G0491500 PROTEIN 2 264 - -
Pvu1g1050 271 MobiDBLite consensus disorder prediction 106 134 - -
Pvu1g1050 271 MobiDBLite consensus disorder prediction 217 239 - -
Pvu1g1050 271 Gene3D - 45 104 - -
Pvu1g1050 271 SUPERFAMILY Homeodomain-like 45 100 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1050 Pvu-Chr1 23326015 23330110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1050 42 176 G2-like Transcription Factor Family AT4G28610 57.778 3.67e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu1g1050 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1050 - - gmx:100783132 448.358