LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g1048	ATGGGGAAGAAGCGAAAGGCAGCACCCAAATCTTCTCAATCCGCTGAGCCTCCGCTCAAGCTTCACCAACCTGAACCCCAAATTGCGCCACCCGAGTACGAGGAAGTCGAAGAGGAAGAAGAGGAGGTAGAAGAAGTAGAAGAGGAAGTAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGACGATCAAGAGCAACAACAACAACAACAAGACGACGACGACCCGATCGAGAAGCTTTTGGAACCTTTAAGCAAGGAACAGATCGTGAACCTTCTTAGCGAGGCGGCAGCAAATCACCGCGACGTGGCGGACCGGATCCGCAAGGCCGCTAACGAGGATCCCGTGCACAGGAAGATCTTTGTGCACGGGTTGGGGTGGGACACCACAGCGGGAACCCTAATCAGTGCGTTCCGGCAGTACGGAGAGATCGAGGACTGCAAGGCCGTAACCGATAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGACGCGGCGCGGCGCGCGCAACGCTCTCAAGGAGCCGCAGAAGAAGATCGGCAACCGTATGACGGCGTGCCAGCTGGCGTCCATCGGCCCCGTCAGTGGCAGCCAGAGCCAGCCGCAGGCATTGCCTTCCTCGGCGCCGGTGCTGTCATCGTCGGGTTCGGAGTACACGCAGAGGAAGATCTACGTGAGCAACGTCGGTGCGGAACTCGATCCGCAGAAGCTTCTGGCGTTCTTTTCACGGTTCGGGGAAATTGAAGAGGGACCTTTGGGGCTGGATAAGCTAACCGGAAAACCGAAAGGGTTTTGTTTGTTTGTTTACAGGAGTGCGGAGAGTGCGAGGAGAGCCTTGGAGGAGCCTCATAAGGACTTTGAGGGGCATATTTTGCACTGCCAGAAGGCGATTGATGGGCCCAAGCCTGGGAAGTTGCAGCAGCAGCAACACGGGAACGTAAATGCCCAGGCTCAGCGGACCCAGTATCAGAGGAATGATACTGCCAATACAGGTGGTGCGTATGTTGGTGGTGCTGCGGCAGCACAGCCGGGGCACTTGATGGCTCCAGCTGGGCCAGGGATTGGGTTTAACCAGGCAACGTTGAATCCGGCATTGGGGCAGGCGTTGACGGCCCTCCTGGCGTCGCAGGGGACGTTGGGGCTGACGAATTTGTTGGGGAGTATTGGAACGAGTGCTGCGGTGAACCCTGGTGTGCCTGCTTCGGGGGCTGGAGTACAGAGTGGTTACAGTGCTCAGTCAAATATTAGTCCCGGTGTCATTGGAGGATATGGAACCCAGGTGGGCTTGCAGGCTTCATATCCGAATCAGAATCAGCAGATAGGGCAGGGTGGTTCTGGAAGAGGGCAATATGGTAGTGGTGGTGCGCCTTACATGGGGCATTAG	1404	0.5655	MGKKRKAAPKSSQSAEPPLKLHQPEPQIAPPEYEEVEEEEEEVEEVEEEVEEEEEEEEEEEEEEDDQEQQQQQQDDDDPIEKLLEPLSKEQIVNLLSEAAANHRDVADRIRKAANEDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKEPQKKIGNRMTACQLASIGPVSGSQSQPQALPSSAPVLSSSGSEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYRSAESARRALEEPHKDFEGHILHCQKAIDGPKPGKLQQQQHGNVNAQAQRTQYQRNDTANTGGAYVGGAAAAQPGHLMAPAGPGIGFNQATLNPALGQALTALLASQGTLGLTNLLGSIGTSAAVNPGVPASGAGVQSGYSAQSNISPGVIGGYGTQVGLQASYPNQNQQIGQGGSGRGQYGSGGAPYMGH*	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g1048	467	Gene3D	-	205	341	IPR012677	-
	Pvu1g1048	467	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	123	189	IPR000504	GO:0003723
	Pvu1g1048	467	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	230	297	IPR000504	GO:0003723
	Pvu1g1048	467	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	228	317	IPR000504	GO:0003723
	Pvu1g1048	467	PANTHER	GEO13361P1-RELATED	27	467	-	-
	Pvu1g1048	467	MobiDBLite	consensus disorder prediction	200	220	-	-
	Pvu1g1048	467	Gene3D	-	31	202	IPR012677	-
	Pvu1g1048	467	PANTHER	-	27	467	-	-
	Pvu1g1048	467	MobiDBLite	consensus disorder prediction	31	74	-	-
	Pvu1g1048	467	MobiDBLite	consensus disorder prediction	1	77	-	-
	Pvu1g1048	467	CDD	RRM_RBM24_RBM38_like	228	303	-	-
	Pvu1g1048	467	SUPERFAMILY	RNA-binding domain, RBD	113	203	IPR035979	GO:0003676
	Pvu1g1048	467	SUPERFAMILY	RNA-binding domain, RBD	213	326	IPR035979	GO:0003676
	Pvu1g1048	467	SMART	rrm1_1	229	301	IPR000504	GO:0003723
	Pvu1g1048	467	SMART	rrm1_1	122	194	IPR000504	GO:0003723
	Pvu1g1048	467	Coils	Coil	33	77	-	-
	Pvu1g1048	467	MobiDBLite	consensus disorder prediction	442	467	-	-
	Pvu1g1048	467	CDD	RRM_RBM24_RBM38_like	121	196	-	-
	Pvu1g1048	467	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	121	198	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g1048	Pvu-Chr1	23283884	23290673	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g1048	215	316	C2H2 Transcription Factor Family	AT2G19380	33.333	5.60e-11	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g1048	K12741		-	gmx:100784200	640.573