Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1044 ATGGAAGAGCCTATTGTGTTGAACAAAGGCGAGGAGCCTCTAGATTTGCCTCCAGGTTTCAGGTTTCACCCTACAGATGAGGAGATAATCACTCATTATCTCACCGAGAAGGTGAAGAATAGTAGTTTCAGTGCAATTGCAATTGGAGAGGCTGATTTGAATAAGTGCGAACCTTGGGATTTACCGAAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGGAAGTATCCAACTGGCATGAGAACCAATAGAGCAACAGAATCTGGGTACTGGAAGGCCACTGGAAAAGATAAGGAGATTTACAAAGGGAAAGGCAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGTGAGAAGACCAATTGGGTCATGCATGAATTCAGATTGGAGGGCAAATTTGCAAGTTACAATCTTCCTAAGGCAGCAAAGGACGAATGGGTTGTCTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGTCCTCAATTCCTGGCCTTCTGAGGATAAACTCCATTGGGGATGATCTACTTGACTATTCTTCACTTCCACCTCTCATGGATCCTCCTTATGGCAACACCAACACCACTAACCCACTTTCATCAACTAAATCACAATCAGAGGGTTATTATCTTCCCAGTTTCTCCATCAACAACCACCACCAGCTTCTCATCAAGCCAGAAGACCACCACAGAAGCTATGAGATTCCCACAATCAGTTACACCTCCAACCAAGCCAATCTCAACAACAACGTTAACCCAATTGGAAACAACACACTCTCACAACCCTCAAACATGTTCTCTGATTACTATGTGCACCAAAACAGGATCAGAAGTTCCATCATGCCAAGTATTGAAGGCTCGGGTTTCGGTAACAACAACAACATTACCAACCACGATCAAGCTATCCTTAGAGCATTTGCAGCCAAGAACAACGAGCACTTGGGAGGAATACTGGAGAAACAGTGCAAGATGGAGCAATTCTCTTCTAACCACTCACAAGAAACGGGCTTAAGCAACGACAGAAACACTGAAACATCCTCGGTGGTTTCGAAGCAGGACAACATGGGAAGAAATCGCGCATTGTACGAGGATCTTGAAGGTCCTTCTTCAGTTGCACCTCTCTCAGATTTGGAATGCCTGCAGTGGGATGACTACTGA 1197 0.4461 MEEPIVLNKGEEPLDLPPGFRFHPTDEEIITHYLTEKVKNSSFSAIAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKSSIPGLLRINSIGDDLLDYSSLPPLMDPPYGNTNTTNPLSSTKSQSEGYYLPSFSINNHHQLLIKPEDHHRSYEIPTISYTSNQANLNNNVNPIGNNTLSQPSNMFSDYYVHQNRIRSSIMPSIEGSGFGNNNNITNHDQAILRAFAAKNNEHLGGILEKQCKMEQFSSNHSQETGLSNDRNTETSSVVSKQDNMGRNRALYEDLEGPSSVAPLSDLECLQWDDY* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1044 398 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Pvu1g1044 398 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Pvu1g1044 398 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Pvu1g1044 398 MobiDBLite consensus disorder prediction 339 367 - -
Pvu1g1044 398 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Pvu1g1044 398 MobiDBLite consensus disorder prediction 339 370 - -
Pvu1g1044 398 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 389 - -
Pvu1g1044 398 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100-LIKE 6 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1044 Pvu-Chr1 23149740 23152402 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1044 1 396 NAC Transcription Factor Family AT5G18270 49.631 5.51e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu1g1044 NAM 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1044 - - gmx:100784372 699.893