Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1041 ATGGGAAGCCCTCAATCCAATTTGCCACCCGGTTTTAGGTTCCACCCAACAGATCAAGAGCTCATTCTTCACTACCTTAGCAAAAAGGTTGCATCCATACCCTTGCCCGTTTCCATCATTGCCGAGGTTGATATCTACAAGTTAGATCCATGGGACTTGCCAGCAAAAGCAACGTTTGGGGAGAAAGAATGGTATTTTTTCAGTCCTAGAGACCGAAAGTACCCAAATGGGGCAAGGCCAAACAGGGCAGCTGCTTCAGGATATTGGAAGGCCACTGGCACAGATAAGACCATAGTGACATCATTGCAAGGTGGAGCAGCCCAAGAGAACGTTGGTGTGAAGAAGGCTTTGGTGTTCTACGAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAACAACAAACCCATTAAGCTCAAAGACTCCTCCATGAGATTGGATGATTGGGTGTTGTGTCGGATTTACAAGAAGTCCAAACATGCTCTAACTTCAGCGGAGGCAACAATAGGGGTTGGTGAGGTAGATCAAGCAGAGGAACACCTATTCAAAGAGACCCTTTTACCAATCTTAAATTTTCCAACACCACCTCCTCAGACCACATTGATGTCTCAAAAATCTGTGTCCTTTTCCAACCTGTTGGATGCCATGGACTACTCTGTACTAAGCAGTTTCTTATCAGAGAATCATTCCAACCCTGCAGGGATTGGATCAAGTGCAGGCTTCAACAGTGAGAATTTGGAACAACAATCCTCTCCAATCAACAACCCCACCAATAGCTACACGTTTCAGAAGAACACCCAATTGAACCCTTCACTCTCCAACATGGAAAGCATGAGGCCAAAGCGCCAAGTTTCAAACATTGATGATGAAACTCTGTACCCATCAAAGAAATACCTGAGTTCCTCTTGCAACTTTCCTACATACGAGAATCCACAATGGAACTACCTCGTCAAACAGTCTTTACTGAATCAGCGGTTACTGCTTGGTCCTCAGCTTCAATTTCAAGGATAA 1038 0.4499 MGSPQSNLPPGFRFHPTDQELILHYLSKKVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLQGGAAQENVGVKKALVFYEGRPPKGVKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKHALTSAEATIGVGEVDQAEEHLFKETLLPILNFPTPPPQTTLMSQKSVSFSNLLDAMDYSVLSSFLSENHSNPAGIGSSAGFNSENLEQQSSPINNPTNSYTFQKNTQLNPSLSNMESMRPKRQVSNIDDETLYPSKKYLSSSCNFPTYENPQWNYLVKQSLLNQRLLLGPQLQFQG* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1041 345 SUPERFAMILY NAC domain 4 166 IPR036093 GO:0003677|GO:0006355
Pvu1g1041 345 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Pvu1g1041 345 PANTHER NAC TRANSCRIPTION FACTOR 56 5 298 - -
Pvu1g1041 345 MobiDBLite consensus disorder prediction 244 265 - -
Pvu1g1041 345 Gene3D NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
Pvu1g1041 345 PANTHER OS01G0104200 PROTEIN 5 298 - -
Pvu1g1041 345 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1041 Pvu-Chr1 23040328 23042480 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1041 4 345 NAC Transcription Factor Family AT3G04070 51.558 1.26e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu1g1041 NAM 9.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1041 - - pvu:PHAVU_001G100200g 702.59