Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1035 ATGAACCCGCGAACGACGTCGTCATCGTCGAAGACGAAGAAGAAGCAAACGGCACCAGAGCCGCACCAAACGGCATGGGGCGGGAGGTACCTCGGCGTGCGCCGGAGGCCGTGGGGACGGTACGCGGCGGAGATTCGCGACCCTTCCACCAAGGAGCGACACTGGCTTGGCACCTTCGACACCGCCGACGAGGCCGCACTCGCCTACGACAGAGCTGCACGTGCCATGCGCGGCTCACGTGCACGCACGAACTTCGTCTACGCTGACACCACTCCCGGCTCATCCCTCACCCCCATCATCTCCCCCGACCAACAACCCCTCCCTCAACCCGACCCGGTTCTAACCGTCGACCCGTTTTCCCTCCTCGGGTTTCCCTCCGGTTCTTCCTCCTACGATGAAAATGCCTCGGCCAGCGTGGCCGCTTCCCACTTCAGCCAACAATCGTTTTTCGAAAACAATAATAACAATAATTATTATAATAATAATAACAATGATAATGAGAAGAGTGGGAGCACAGTGGAGCTTCCTCCATTGCCACCGGATATTACAAGTTCCATGGGTTACGAGATGGAACATCAGAGTGGTGGATTTTATTGGGAGGCTAGTCCAATGTTTAGCGCAATGTCAACAGTGTCAGAGAATGTGGGTGCAGAGTCTCAAGTTTTTGAGTTGGGCATCTCCTCCTATTTCCTCTGA 696 0.5517 MNPRTTSSSSKTKKKQTAPEPHQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTADEAALAYDRAARAMRGSRARTNFVYADTTPGSSLTPIISPDQQPLPQPDPVLTVDPFSLLGFPSGSSSYDENASASVAASHFSQQSFFENNNNNNYYNNNNNDNEKSGSTVELPPLPPDITSSMGYEMEHQSGGFYWEASPMFSAMSTVSENVGAESQVFELGISSYFL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1035 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 229 - -
Pvu1g1035 231 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Pvu1g1035 231 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Pvu1g1035 231 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Pvu1g1035 231 MobiDBLite consensus disorder prediction 152 177 - -
Pvu1g1035 231 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Pvu1g1035 231 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Pvu1g1035 231 MobiDBLite consensus disorder prediction 152 171 - -
Pvu1g1035 231 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Pvu1g1035 231 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Pvu1g1035 231 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Pvu1g1035 231 MobiDBLite consensus disorder prediction 1 29 - -
Pvu1g1035 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 8 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1035 Pvu-Chr1 22388801 22389496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1035 7 214 AP2-EREBP Transcription Factor Family AT5G13910 45.495 8.45e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu1g1035 AP2 8.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1035 K09286 - gmx:100792421 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1035 1 22388801 22389496 Pvu1g1035 1 22388801 22389496 ECH
Pvu1g1035 1 22388801 22389496 Pvu4g0740 4 10270274 10271682 PCT