Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1031 ATGAGTTTTCAAGACATCCAAGGTGGGCCTCACCCTCCCTCTCGCCGGAGCCAGTCACCGGCGCAGGCCGTCGCCGCCGGAATTTTCCAGATCAACACTGCCGTCGCCACTTTCCGGCGACTCGTTGATGCCGTCGGAACCGTTAAAGACACTTCCGAACACCGTCAGAAACTGCACAATACGAGGCAGAGGATATTGCAACAGGTGAAGGATACTTCTGCTAAGCTCAAATCCTTGAGTGAATCTGATCGTGATGCTAATTCCAATGCTAGTCAGAAAATTGAAGATGCTAAGCTTGCTAGAGATTTTCAAACGACATTGCAAGAGTTTCAGAAAGTACAGCAGCTTGCCTCTGAGCGTGAATTGGCTTACACCCCTGCCTCCCCCTCTTCTACTTTACCAATAAGCTCTGGCTCTGGTGAAGAATCGACTGGAATAGATGTTGAAAGTCAACCTTTTATTAGAGAGCAGAAGAGGCAAGAGATACTTCTATTAGATAATGAAATATCATTCAACGAGGCCATGATTGATGAAAGAGAACAGGGAATTAGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGACCTTGCTGTTCTTGTTCATGATCAGGGAGTTGTTATTGATGACATTCAATCAAATATTGATGCTTCTGCTGGTGCAACAACCCAAGCTAGGGTCCAACTAGCCAAGGCTTCTAAAAGTGTGAAATCCAGAACCTCATGGTGTTGGTGGGTGCTTGCAATTTTTGTGGTCGTGCTGGTCATATTACTTATTGTACTCATTCTTTAG 801 0.4507 MSFQDIQGGPHPPSRRSQSPAQAVAAGIFQINTAVATFRRLVDAVGTVKDTSEHRQKLHNTRQRILQQVKDTSAKLKSLSESDRDANSNASQKIEDAKLARDFQTTLQEFQKVQQLASERELAYTPASPSSTLPISSGSGEESTGIDVESQPFIREQKRQEILLLDNEISFNEAMIDEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVIDDIQSNIDASAGATTQARVQLAKASKSVKSRTSWCWWVLAIFVVVLVILLIVLIL* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1031 266 Gene3D - 12 129 - -
Pvu1g1031 266 PANTHER SYNTAXIN 13 265 IPR045242 -
Pvu1g1031 266 MobiDBLite consensus disorder prediction 122 147 - -
Pvu1g1031 266 SMART tSNARE_6 168 235 IPR000727 -
Pvu1g1031 266 CDD SNARE_Qa 176 234 - -
Pvu1g1031 266 Pfam Syntaxin-like protein 25 123 IPR006011 GO:0016020
Pvu1g1031 266 Pfam SNARE domain 210 261 IPR000727 -
Pvu1g1031 266 MobiDBLite consensus disorder prediction 124 146 - -
Pvu1g1031 266 Gene3D - 167 266 - -
Pvu1g1031 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Pvu1g1031 266 SMART SynN_4 8 122 IPR006011 GO:0016020
Pvu1g1031 266 PANTHER SYNTAXIN-22-LIKE 13 265 - -
Pvu1g1031 266 MobiDBLite consensus disorder prediction 1 22 - -
Pvu1g1031 266 SUPERFAMILY t-snare proteins 19 228 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1031 Pvu-Chr1 22127464 22130132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1031 1 253 SNARE and Associated Proteins AT5G46860 57.143 1.37e-94 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1031 - K08488 gmx:100787141 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1031 1 22127464 22130132 Pvu1g1031 1 22127464 22130132 ECH