LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g1001	ATGGGATCTGGCAATGAGGTCCACTCAGTTGTGGAGTTTATTCTCGATGCAAAGTGGCTTATAGATCCCAAGCAACTATTTGTTGGGCCAAAAATTGGGGAAGGTGCCCATGCCAAAGTGTACGAAGGAAAATATAAAAATCAGAATGTTGCTGTTAAGATTATTAATAAGGGTGAAACCCCAGAACAGATTTCTAGGAGAGAGGCTCGGTTTGGCAGAGAAATTGCAATGTTATCTAGAGTTCAACACAAAAATCTAGTTAAGTTTATTGGAGCCTGCAAAGAACCAGTTATGGTTATTGTAACTGAACTTCTGTTAGGGGGAACTTTGCGCAAATACCTGTGGGGTATCCGGCCAAACTGCTTGGATATGCGGGTGGCAGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGCTTACACTCTCATGGGATCATCCATCGTGACCTTAAACCTGATAACCTGATTTTGACAGAAGATCATAAAACTGTTAAACTTGCCGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAGACAGGGACATATCGTTGGATGGCTCCAGAACTTTACAGCACTGTCACTCTAAGACAAGGAGAGAAGAAGCATTACAACCATAAGGTGGATGCTTACAGTTTTGCTATAGTGTTGTGGGAGCTCGTCCATAATAGGTTGCCTTTTGAAGGCATGTCAAATCTACAGGCTGCATATGCAGCTGCATTTAAGAATACAAGGCCTAGTGCTGAAGACCTCCCTGATGAATTAGCTGGAATTGTGACCTCTTGTTGGAAAGAAGATCCAAATGATCGACCCAATTTTAGTCAAATAATACAGATGTTGCTTCAATATCTAATTACCATTTCACCGGCCGATCCAGTTGTTCCAATGCGAATTGCATCATCCAAAAATGCTGTGTTCCCACCAGAATCTCCAGGTACAAGTGCTTTAATGGCTGGAAGAGATGATTCTGGAGAAACCCCACAAGTTGATATTGAAGGCAGGTCTAAATGGTGTTTCTTTTGCTCTAATCACTGTTATTGA	1059	0.4202	MGSGNEVHSVVEFILDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEQISRREARFGREIAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLWGIRPNCLDMRVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTEDHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELVHNRLPFEGMSNLQAAYAAAFKNTRPSAEDLPDELAGIVTSCWKEDPNDRPNFSQIIQMLLQYLITISPADPVVPMRIASSKNAVFPPESPGTSALMAGRDDSGETPQVDIEGRSKWCFFCSNHCY*	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g1001	352	Pfam	Protein tyrosine and serine/threonine kinase	29	286	IPR001245	GO:0004672\|GO:0006468
	Pvu1g1001	352	SUPERFAMILY	Protein kinase-like (PK-like)	16	307	IPR011009	-
	Pvu1g1001	352	ProSiteProfiles	Protein kinase domain profile.	26	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu1g1001	352	PANTHER	PROTEIN KINASE ATN1	1	329	-	-
	Pvu1g1001	352	PRINTS	Tyrosine kinase catalytic domain signature	102	115	IPR001245	GO:0004672\|GO:0006468
	Pvu1g1001	352	PRINTS	Tyrosine kinase catalytic domain signature	140	158	IPR001245	GO:0004672\|GO:0006468
	Pvu1g1001	352	PRINTS	Tyrosine kinase catalytic domain signature	214	236	IPR001245	GO:0004672\|GO:0006468
	Pvu1g1001	352	PRINTS	Tyrosine kinase catalytic domain signature	257	279	IPR001245	GO:0004672\|GO:0006468
	Pvu1g1001	352	SMART	serkin_6	26	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu1g1001	352	CDD	STKc_MAP3K-like	32	286	-	-
	Pvu1g1001	352	ProSitePatterns	Protein kinases ATP-binding region signature.	32	53	IPR017441	GO:0005524
	Pvu1g1001	352	PANTHER	SERINE-THREONINE PROTEIN KINASE	1	329	-	-
	Pvu1g1001	352	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	146	158	IPR008271	GO:0004672\|GO:0006468
	Pvu1g1001	352	Gene3D	Phosphorylase Kinase; domain 1	15	105	-	-
	Pvu1g1001	352	Gene3D	Transferase(Phosphotransferase) domain 1	107	296	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g1001	Pvu-Chr1	21245544	21260768	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g1001	9	352	MAP Kinase Kinase Kinase	AT5G50180	75.872	0.0	560

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Pvu1g1001		PK_Tyr_Ser-Thr	2.4e-57	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g1001	-		-	gmx:100809826	650.203