Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0989 ATGGGCACAGTAGAAATGATCATTGCATTTCACATGAAGCCTTTGGTCTTTTTCCTTTGGCTCTTTGTCCCCTCATTGGGCAAACACTTGCTAAGCTGTGAGACACCTTCACCTGATTCTTCTGGCTACCATTGCATTCAAAATGTCTCACACAACCAATGTGCAACATTTGCACTCTTTCTCACTAACTCCTACTACTCCTCTCTCTCCAACCTCACCTCTTACTTGGGACTCAATAAGTTTGTGCTAGCACAAGCAAATGGATTCTCTCCACACACTGAGTTCCTCTCCCTTCATCAACCCCTTCTCATACCAATTCATTGCATTTGCAAAGATGGCTTCTCTCATGCTCAGCTAACCAAAACTACTATCAAAGGAGAGAGCTTCTATGACATTGCTCAATCACTAGAGGGCTTGACAACCTGCAAGGCTATTAGGGATAACAACCCTGGTGTGTCACCTTGGAATCTTGATGACCAACTCAGCTTGATTATCCCATTGAGTTGTTCTTGCCCGTTTTCATCCCAAGTTAGACCGCAGCCAAAGCTTCTGGTTTCTTATCCTGTAAGTGAAGGTGATACAATTTCCAATTTGGCCTCCAAGTTCAATATTACTGAACAAGCTATTGTCTCTGCTAATAACATATCATTACAAGGTCTCAGGGCTAGAACTGCTCTTCCACCCTTTACCTCTATTCTCATTCCACTTAATGGTAAGCCAATCATTGGTCCTTTGGTTAAACCCAAGGAACCTAATTCTAGCTTTCAAACAAACAGCATCCCTGTATTAAGTCCACACAACAAGTCACCAATGTGGAAGACTGAATTGTTCATTGGGCTAGCTGGGGTTGCACTTGGAGTCTGCATTGCTCTTGCTGCAGCCTTTTTCTTCATCAGATTGAAGCACAAGAAGGGGGAAGAGAATTCATGCAAAGAAGGTGGAGATATGGAGCTGCAACATCTGAATCAAAGTGTGAGAACCACCTCCACTAGTGACAAGAAAGTTTCATTTGAGGGGTCTCAGGATACTCTTGATGTGAAAATTGTTGATGCCACATCGCGCAAGATGTTGCTGGAGACATACACCATTGAGAATATGAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGATCAGTATATCACGGCCGTCTGAATGGGAAGAACATGGCAATCAAGAGAACAAAGGCAGCAACAGTCTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACAACCACCCCAACATACTTAGGCTTCTTGGAACAAGCATGTCAGATGGGAAGGAGCAAGAAGAGTCATTTTTAGTTTCTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTTCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCTTGCTACTGTTTCCTGACATGGAGCCAAAGGCTCAGGATCTGCCTTGATGTGGCCAGTGCCTTGCAGTATATGCACCATGTTATGAATCCCTGCTATGTGCATAGAAATGTAAAGAGCAGGAACATCTTTTTGGATGAAGAATTTGGTGCCAAGATAGGGAATTTTGGTATGGCAGGTTGTGTTGAGCATGACACTGAGGATCCACACTTCTATTCCACCAACCCCGCCTCTTGGAGCCTTGGTTATTTGGCACCTGAATATGTGCACCAAGGTATAATTTCCCCAAGCATTGATATCTTTGCCTATGGGGTGGTTTTGCTAGAGGTTTTATCTGGTCAAACTCCTATAAGCAGGCCTAATGAGAAGGGAGAAGGAAGCATTTGGCTCACGGATAAAATCAAGTCCATCTTGGTGTCTGAAAATGTGAATGAACTAAGGGGTTGGATAGACAGTGCATTAGGGGAGAACTATTCATTCGATGCAGCAGTGACCATTGTCAACATTGCAAGAGCTTGTGTGGAGGAAGATTCTTCTTTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTTTCGAGATTGGTGGAGGAATTACCAGAAGGGGAACAACACATGTCAATGAGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACAACAATCTTGAGTGA 2076 0.4335 MGTVEMIIAFHMKPLVFFLWLFVPSLGKHLLSCETPSPDSSGYHCIQNVSHNQCATFALFLTNSYYSSLSNLTSYLGLNKFVLAQANGFSPHTEFLSLHQPLLIPIHCICKDGFSHAQLTKTTIKGESFYDIAQSLEGLTTCKAIRDNNPGVSPWNLDDQLSLIIPLSCSCPFSSQVRPQPKLLVSYPVSEGDTISNLASKFNITEQAIVSANNISLQGLRARTALPPFTSILIPLNGKPIIGPLVKPKEPNSSFQTNSIPVLSPHNKSPMWKTELFIGLAGVALGVCIALAAAFFFIRLKHKKGEENSCKEGGDMELQHLNQSVRTTSTSDKKVSFEGSQDTLDVKIVDATSRKMLLETYTIENMRKATEDFSSSNHIEGSVYHGRLNGKNMAIKRTKAATVSKIDLGLFHDALHNHPNILRLLGTSMSDGKEQEESFLVSEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVASALQYMHHVMNPCYVHRNVKSRNIFLDEEFGAKIGNFGMAGCVEHDTEDPHFYSTNPASWSLGYLAPEYVHQGIISPSIDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIKSILVSENVNELRGWIDSALGENYSFDAAVTIVNIARACVEEDSSLRPSAREIVEKLSRLVEELPEGEQHMSMSESSSKPLVKAVENNNLE* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0989 691 Pfam LysM domain 187 222 IPR018392 -
Pvu1g0989 691 SMART LysM_2 186 235 IPR018392 -
Pvu1g0989 691 ProSiteProfiles LysM domain profile. 185 234 IPR018392 -
Pvu1g0989 691 ProSiteProfiles Protein kinase domain profile. 346 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0989 691 SUPERFAMILY Protein kinase-like (PK-like) 356 657 IPR011009 -
Pvu1g0989 691 MobiDBLite consensus disorder prediction 665 691 - -
Pvu1g0989 691 CDD LysM 185 216 IPR018392 -
Pvu1g0989 691 Pfam Protein kinase domain 381 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0989 691 Gene3D Phosphorylase Kinase; domain 1 346 444 - -
Pvu1g0989 691 Gene3D Transferase(Phosphotransferase) domain 1 445 681 - -
Pvu1g0989 691 Gene3D LysM domain 184 235 IPR036779 -
Pvu1g0989 691 PANTHER PROTEIN LYK2 7 686 - -
Pvu1g0989 691 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 686 - -
Pvu1g0989 691 MobiDBLite consensus disorder prediction 670 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0989 Pvu-Chr1 20771905 20774302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0989 34 683 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.206 1.32e-140 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pvu1g0989 Pkinase 3.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0989 - - gmx:100816082 1207.59