Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0979 ATGGGGGAAGATTCGAGGGAGTTTGGAGAAAGCACCAAAATCAACCACAAGATGGAAGAAGTTCAAAGAGAAGAAGAAATAGACCCAGAAGGCAATCCACTGAATGAGCCACTGCTCAAGAGGAATCGAACACTGTCTTCCAACCCTCTTGCTCTGGTTGGAGAAAAAGTCTCCTACATAGAAAGCTTGGATTATGAGATAAATGAGAATGATCTTTTCAAGCATGACTGGAGAAGCAGATCAAGAGTTCAAGTGTTGCAGTACATATTCTTGAAATGGTTACTAGCATTCCTTGTTGGACTTCTCACTGGTATTATAGCTACTCTCATTAATCTTGCTGTTGAGAATATTTCTGGGTATAAGCTTCTGGCTGTTCTTAGTTACATCCACAAAGAAAGGTACTTGACAGGTTTCCTATATTTCACGGGCATGAATTTCATTTTGACCTTTGTTGCTGCTATTCTGTGTGTGTGTTTTGCACCCACAGCAGCAGGACCTGGAATTCCTGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTTTGGTGCTACAACATTGATTGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCGGGACTAGATTTAGGAAAAGAAGGACCGTTGGTACATATAGGAAGCTGCATTGCTTCCTTGCTAGGCCAGGGAGGCCCCGACAATTACAGGATCAAATGGCGTTGGCTTCGATATTTTAACAATGATCGTGACCGTCGGGATCTTATCACCTGTGGTTCATCTTCGGGAGTTTGTGCAGCTTTCCGGGCTCCAGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTACTCTGGAGAACTTTTTTTAGCACAGCTGTGGTGGTGGTGGTTCTCAGGGCCTTCATTGAACTCTGCCATTCTGGAAAATGTGGCCTTTTTGGTGAAGGAGGTTTGATTATGTTTGATGTAAGCAATGTCACAGTCAGGTACCATTTTATGGATATTGTCATCGTCGTAGTAATTGGTATCATAGGCGGGATATTGGGAAGCCTTTACAATCATCTGCTACACAAGATCCTCAGACTCTACAATCTCATAAATCAGAAAGGAAAGATACATAAACTCCTCCTCAGTCTTGCAGTTGCACTCTTCACATCCGTATGCCAATATGGTCTCCCATTCTTAGGAAAATGTACCCCATGTGATTCTTCGATTCGAGAGTCAGCATGCCCTACAAATGGACGGTCCGGAAATTTCAAACAATTCAACTGTCCACCTGGCTTCTATAACGATCTTGCTACTCTGCTGCTTACCACTAATGATGATGCTGTTCGAAACATATTCTCAACCAACACCCCTCAAGAATATCAACCCTTGTCCCTCCTAATTTTCTTTGTATTATATTGCATATTAGGACTAATTACTTTTGGAATTGCAGTGCCATCTGGGCTTTTCCTCCCAATTATTCTTATGGGCTCAGGTTATGGCCGCCTTCTTGGCATCTATATGGGGTCTTCTACAAACATTGACCAAGGGCTGTTTGCCGTACTCGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGAATGACGGTATCCCTTTGTGTGATCTTTCTTGAACTCACCAATAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTGGGAGACAGTTTCAACCCAAGTATCTATGAGATTATACTGCACTTGAAAGGCCTCCCTTTCATGGATGCAAATCCCGAGCCATGGATGAGAAATCTCACTGTGGGAGAACTTGTTGATGTGAAGCCATCAGTGGTTACCCTCCACGGAATAGAAAAGGTAGCTAAAATAGTAGATGTCTTGAAAAACACTACGCATAATGGCTTCCCTGTTATGGATGATGGGGTAGTAGTACCACCAGTAGTAGGACAAGCCAATGGAGCAACAGAACTGCATGGACTAGTTCTTAGAGCACATCTCATCCAAGCACTAAAGAAGAAGTGGTTCTTTAAAGAAAGAAGGAGAACAGAGGACTGGGAAGTGAGACAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGGGGTGGCTGTGACCAGCGAGGAAATGGAGATGTTTGTTGATCTACATCCTCTCACCAATACAACTCCCTTTACAGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGATTCTCTTCAGGCAAGTTGGACTTCGTCATCTGTTAGTAGTACCCAAGTATCAAGCATCCGGGGTATCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTGCTGGCACACAACATTTCGACAGTCTTTCCTCACCTGGCAAAATCTAAGAGCAGAGGAAAGAGGAATTGA 2376 0.436 MGEDSREFGESTKINHKMEEVQREEEIDPEGNPLNEPLLKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWLLAFLVGLLTGIIATLINLAVENISGYKLLAVLSYIHKERYLTGFLYFTGMNFILTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCHSGKCGLFGEGGLIMFDVSNVTVRYHFMDIVIVVVIGIIGGILGSLYNHLLHKILRLYNLINQKGKIHKLLLSLAVALFTSVCQYGLPFLGKCTPCDSSIRESACPTNGRSGNFKQFNCPPGFYNDLATLLLTTNDDAVRNIFSTNTPQEYQPLSLLIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIYMGSSTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVTLHGIEKVAKIVDVLKNTTHNGFPVMDDGVVVPPVVGQANGATELHGLVLRAHLIQALKKKWFFKERRRTEDWEVRQKFTWVELAEREGSIEGVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNISTVFPHLAKSKSRGKRN* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0979 791 MobiDBLite consensus disorder prediction 1 35 - -
Pvu1g0979 791 MobiDBLite consensus disorder prediction 1 30 - -
Pvu1g0979 791 CDD ClC_6_like 61 583 - -
Pvu1g0979 791 PANTHER CHLORIDE CHANNEL PROTEIN 9 786 - -
Pvu1g0979 791 SMART cbs_1 721 774 IPR000644 -
Pvu1g0979 791 SMART cbs_1 605 666 IPR000644 -
Pvu1g0979 791 Gene3D - 586 777 IPR046342 -
Pvu1g0979 791 Pfam Voltage gated chloride channel 149 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu1g0979 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 9 786 - -
Pvu1g0979 791 Pfam CBS domain 720 770 IPR000644 -
Pvu1g0979 791 SUPERFAMILY CBS-domain pair 587 771 IPR046342 -
Pvu1g0979 791 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu1g0979 791 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu1g0979 791 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu1g0979 791 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu1g0979 791 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu1g0979 791 SUPERFAMILY Clc chloride channel 70 585 IPR014743 -
Pvu1g0979 791 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 772 - -
Pvu1g0979 791 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu1g0979 791 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu1g0979 791 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu1g0979 791 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu1g0979 791 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu1g0979 791 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu1g0979 791 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu1g0979 791 Gene3D Clc chloride channel 83 585 - -
Pvu1g0979 791 ProSiteProfiles CBS domain profile. 718 784 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0979 Pvu-Chr1 20564994 20570123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0979 3 785 Ion Channels AT3G27170 78.544 0.0 1244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0979 K05016 - gmx:100788620 1461.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0979 1 20564994 20570123 Pvu1g0979 1 20564994 20570123 ECH
Pvu1g0979 1 20564994 20570123 Pvu4g0590 4 7075125 7079504 PCT