Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0962 ATGGCGATGAAAGTGGAGCACAATCAGAATCAGCAATTAGGGTTTCCGTTCTGGAAACCGCTCCGTCGCAGGTTCGGACCCGACTCTCCTTTCTTCGCTCCCGGTAACCTCGAACGAGAACTTCTTGCTAAACAGGTTGCTTTGGAATTGACAGAAGAGAAGGATCAGCTTGAGAAATGGATGCAAGAGGAAGAAGGAAGGGAAATCTTTTGTCCCATTGTTGGTTGTGGTGCACGCTTGACTTCAATGGATGACTTCGAAAATCACTATAATGCAAGGCATACTGCATCTTGTTCTGTATGCTCTAGAGTCTACCCAACGTCGCGGTTGCTCAGCATACATGTATCTGAAGTGCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGTTACGATATGTATGAATGCTTGGTGGAAAGGTGTGGTTTGAAATTCAAAAGCTACAATCGTAGGCATCAGCATCTAGTTGACAAGCATAAATTCCCCACCTCATTTGAGTTTTTCAAGAAGGCTAAACCATCTAAGAAACAGAGATTGAAGTCCCAACACAAAAAAGCTGTTCCTAAGGAGGATGCTGCAGGAATGATGGAAGTGGAAAACGCAGCCGTGGATGACCTTGTTTCAGCAGTCTCTAAACTGAGCACTTCTGACTCCACCCCTTCATCTATCAGCTTTGGTCGCCGCAGCAAAGGCTTGTCATTTGTCCCTCGAACTGTTCGGCACAGAGATCAATCAAACTCAGCGGAATCTGAGACAAAGAGATAA 765 0.4523 MAMKVEHNQNQQLGFPFWKPLRRRFGPDSPFFAPGNLERELLAKQVALELTEEKDQLEKWMQEEEGREIFCPIVGCGARLTSMDDFENHYNARHTASCSVCSRVYPTSRLLSIHVSEVHDSFFQAKVARGYDMYECLVERCGLKFKSYNRRHQHLVDKHKFPTSFEFFKKAKPSKKQRLKSQHKKAVPKEDAAGMMEVENAAVDDLVSAVSKLSTSDSTPSSISFGRRSKGLSFVPRTVRHRDQSNSAESETKR* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0962 254 PANTHER ZINC FINGER PROTEIN 511 10 244 - -
Pvu1g0962 254 ProSitePatterns Zinc finger C2H2 type domain signature. 71 94 IPR013087 -
Pvu1g0962 254 MobiDBLite consensus disorder prediction 234 254 - -
Pvu1g0962 254 Coils Coil 43 67 - -
Pvu1g0962 254 ProSitePatterns Zinc finger C2H2 type domain signature. 136 159 IPR013087 -
Pvu1g0962 254 SMART c2h2final6 96 119 IPR013087 -
Pvu1g0962 254 SMART c2h2final6 134 159 IPR013087 -
Pvu1g0962 254 SMART c2h2final6 69 94 IPR013087 -
Pvu1g0962 254 ProSitePatterns Zinc finger C2H2 type domain signature. 98 119 IPR013087 -
Pvu1g0962 254 PANTHER UNCHARACTERIZED 10 244 IPR039258 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0962 1 250 C2H2 Transcription Factor Family AT5G14140 63.077 1.25e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g0962 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0962 - - gmx:100819557 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0962 1 19459792 19462352 Pvu1g0962 1 19459792 19462352 ECH