Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0943 ATGGAAGTGTTAAACCCAGTTGAAGGCAAGACCTATAGGCTCCCAGTTGGGTACAGGTTCGACCCCACTGATGAAATTCTTGCAGGCTACTACCTCAGGAAGAGGATCATGGCACAGCCACTCCCTAATGACCTCATCCAAGACTGTGATGTTCACCAGACTGAGCCTTGGGCTCTCCCAGGAGGTGGGAAGTATATGAATTGGCATAGGTTTTTCTTCTATGATGTGAGGACCCATGTCTTTGAAAACCCTGAAAAGAGAGATGCTGGGAAAGGCCAATGGGAAGTAGTGGAGAAAGATCAAGAGGTTGAGTTTCCTGACGAACTAGTCATTGCAAAAAAGAGCGTTCTGGTTTACTGGAAAGCCAAGGGCAACTCTCTTGCCAAAACAAATTGGGTGATGCATGAGTTTCGTCTTGCCCTAAAGTCACATCCATCCAAGATGACAGGTATGGCTGTGTGCCGCATATTCGAAACAAAGCGGGGAAAGAAGGCAAAAGGGTCTGAAGGGGTGACCTCTAACAGGAGCAATGTTGAAGAGGCTATGGATGTGACACCCACTGTCATTGATTTCACAGTGGAGTGTGGCACTGAGACTGGTCCTCCCCCTCCTGGGACCCCCTGA 624 0.4872 MEVLNPVEGKTYRLPVGYRFDPTDEILAGYYLRKRIMAQPLPNDLIQDCDVHQTEPWALPGGGKYMNWHRFFFYDVRTHVFENPEKRDAGKGQWEVVEKDQEVEFPDELVIAKKSVLVYWKAKGNSLAKTNWVMHEFRLALKSHPSKMTGMAVCRIFETKRGKKAKGSEGVTSNRSNVEEAMDVTPTVIDFTVECGTETGPPPPGTP* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0943 207 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Pvu1g0943 207 SUPERFAMILY NAC domain 11 158 IPR036093 GO:0003677|GO:0006355
Pvu1g0943 207 PANTHER NAC TRANSCRIPTION FACTOR 56 12 174 - -
Pvu1g0943 207 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Pvu1g0943 207 ProSiteProfiles NAC domain profile. 14 159 IPR003441 GO:0003677|GO:0006355
Pvu1g0943 207 PANTHER NAC DOMAIN-CONTAINING PROTEIN 68 12 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0943 Pvu-Chr1 17340495 17342191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0943 4 190 NAC Transcription Factor Family AT2G18060 31.771 2.31e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu1g0943 NAM 8.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0943 - - gmx:100305869 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0943 1 17340495 17342191 Pvu4g0811 4 12488228 12491271 PCT