Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0940 ATGGGTAGCTGCCCTTGTTTCGGGTTGAGGAAGAAGAGCAAAGGGAAGAGTGTCAATGCGCGGGACGAGGAAAACAAGAATCGTAAATCTGTAGAGAGAATCAATGATGTCTCTGCAAGTTCTTCAGGAAATGGACCAGAAGAAAACCCAAAAGAGGAGGGCGAAAGTCCTCATGAGGCCCGGATATTTACCTTCCGAGAGCTTGCAACAGCAACAAAAAATTTTAGAGATGAAACCTTTATTGGGCAAGGTGGATTTGGCATTGTTTACAAGGGAATGATTGGAGAAAATCAGGTTGTAGCTGTTAAAAGACTTGATACTACAGGTGTCCAAGGGGAGAAAGAATTTCTGGTGGAAGTTCTCATGCTTTCCCTTCTACGCCATTCCAACCTTGTTAATATGATTGGTTACTGTGCGGAAGGGGATCAACGTCTTCTTGTGTATGAGTACATGGCTTTGGGATCCCTAGAATCTCATCTTCATGATGTTTCTCCTGATGAAGAACCACTTGATTGGAATACCAGAATGATGATAGCCTGTGGGTCAGCAAAAGGACTCCATTATCTGCACGATGAAGCAAAGCCCTCTGTTATATACAGGGATCTTAAAACTTCCAACATACTATTGGATGAAGATTTCCATCCAAAACTTTCTGATTTCGGGCTTGCAAAGTTTGGTCCAACCGGAGATGAATCATATGTTGCCACTAGGGTCATGGGAACACAAGGTTACTGTGCCCCTGAATATGCCACTAGTGGAAAATTAACGAAGAGATCTGACATTTACAGTTTTGGGGTTGTGTTATTGGAACTAATTACTGGACGCAAAGCATACGATGATAACCGTGGCACTGAAAAGCATCTGGTAGACTGGGCACGTCCAATGTTCAGAGAGAAAAGGAGTTTCCCTAGACTGGTAGATGCACGGCTTGAAGGCAAGTACCCAGGATCTGGTCTACCGATGGTCATTGAATTGACAGCCATGTGTCTTCGTGAAGAGCCACATCAACGGCCTAATGCAGGTGATATAGTGGAAGCTCTGGAATTCTTGTCATCCAAGCAATATTCCCCAAAAGTGTTGAACACAGTCAACAACACAGCTGAGATGGAGAGTGGAGAGTCCTCAAATGAAACGACTGCGATTTTGCCTAAAGAATCAGTAAGAGAGCGAGCTGTTGCAGAAGCCAAGCTGTGGGGGGAGACATGGAGGCAGAGACGACAAAGTCAAGAAAGCAGTCCTAAAGAAGCATATAGGTTGTGA 1260 0.4437 MGSCPCFGLRKKSKGKSVNARDEENKNRKSVERINDVSASSSGNGPEENPKEEGESPHEARIFTFRELATATKNFRDETFIGQGGFGIVYKGMIGENQVVAVKRLDTTGVQGEKEFLVEVLMLSLLRHSNLVNMIGYCAEGDQRLLVYEYMALGSLESHLHDVSPDEEPLDWNTRMMIACGSAKGLHYLHDEAKPSVIYRDLKTSNILLDEDFHPKLSDFGLAKFGPTGDESYVATRVMGTQGYCAPEYATSGKLTKRSDIYSFGVVLLELITGRKAYDDNRGTEKHLVDWARPMFREKRSFPRLVDARLEGKYPGSGLPMVIELTAMCLREEPHQRPNAGDIVEALEFLSSKQYSPKVLNTVNNTAEMESGESSNETTAILPKESVRERAVAEAKLWGETWRQRRQSQESSPKEAYRL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0940 419 ProSiteProfiles Protein kinase domain profile. 75 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0940 419 Pfam Protein kinase domain 76 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0940 419 MobiDBLite consensus disorder prediction 399 419 - -
Pvu1g0940 419 MobiDBLite consensus disorder prediction 15 33 - -
Pvu1g0940 419 SMART serkin_6 75 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0940 419 Gene3D Transferase(Phosphotransferase) domain 1 151 373 - -
Pvu1g0940 419 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Pvu1g0940 419 PANTHER OS07G0668900 PROTEIN 5 373 - -
Pvu1g0940 419 MobiDBLite consensus disorder prediction 11 58 - -
Pvu1g0940 419 PANTHER OS07G0668900 PROTEIN 5 373 - -
Pvu1g0940 419 SUPERFAMILY Protein kinase-like (PK-like) 55 350 IPR011009 -
Pvu1g0940 419 CDD STKc_IRAK 81 348 - -
Pvu1g0940 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Pvu1g0940 419 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0940 Pvu-Chr1 17013496 17019301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0940 1 412 Glycoside Hydrolase AT3G07070 50.930 8.15e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pvu1g0940 Pkinase 8.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0940 K13430 - gmx:100805675 669.077