Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0909 ATGGCAGACCCAACAGCCATGTACGAGTTCCTCAAGCAGCCCTCAAACGCTGGTGTAAAGAGACCACTACCACCACCCTCCACCACCGCCAACATTACTACCACCACCAACACCGCAGCCACCACGCGCACCTTCCAATGCCACTTCTGCCACCGCAAGTTCTACACCTCGCAAGCCCTCGGCGGCCACCAAAACGCCCACAAGCTGGAGCGAGCCGCCGCGAGGAGGCAAACCAACGGCCTTCTCCCGCCGCCCCCGCTGCCTCTGGAGCCTACACTCAAGCCAACCGAAACCAGGCCCAGGCCCATGCTGGAGCCACTGGAGCCCACCACCGGGCTCTTCTTCCACCCTCCCTACTGGCTCGACATGGAGCCCCTGCAGTTCCAAACCACCCACCCTTACGTGACCGCCGCCACCCTTCCCGTTCCGTTCCACGCCGCGTCTTCCACCGTACCCCAACAACAACAAGTCCTTTCCCACAATGTTGACGCTTCCGACCACGTCAACATCGACCTCACTCTCCGCTTGTGA 531 0.6177 MADPTAMYEFLKQPSNAGVKRPLPPPSTTANITTTTNTAATTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARRQTNGLLPPPPLPLEPTLKPTETRPRPMLEPLEPTTGLFFHPPYWLDMEPLQFQTTHPYVTAATLPVPFHAASSTVPQQQQVLSHNVDASDHVNIDLTLRL* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0909 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Pvu1g0909 176 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Pvu1g0909 176 PANTHER ZINC FINGER PROTEIN JAGGED 30 176 IPR045320 GO:0003700
Pvu1g0909 176 MobiDBLite consensus disorder prediction 81 95 - -
Pvu1g0909 176 Gene3D Classic Zinc Finger 27 81 - -
Pvu1g0909 176 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
Pvu1g0909 176 MobiDBLite consensus disorder prediction 78 101 - -
Pvu1g0909 176 MobiDBLite consensus disorder prediction 13 35 - -
Pvu1g0909 176 PANTHER OS02G0182300 PROTEIN 30 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0909 Pvu-Chr1 15832868 15833398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0909 40 87 C2H2 Transcription Factor Family AT5G14010 66.667 4.25e-15 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g0909 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0909 - - vra:106758350 286.574